Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RAS18_RS00580 Genome accession   NZ_CP136635
Coordinates   105992..107371 (+) Length   459 a.a.
NCBI ID   WP_106046247.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100992..112371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS00560 ctsR 101346..101810 (+) 465 WP_003328320.1 transcriptional regulator CtsR -
  RAS18_RS00565 - 101824..102381 (+) 558 WP_003328319.1 UvrB/UvrC motif-containing protein -
  RAS18_RS00570 - 102381..103472 (+) 1092 WP_010787416.1 protein arginine kinase -
  RAS18_RS00575 clpC 103469..105907 (+) 2439 WP_003328317.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  RAS18_RS00580 radA 105992..107371 (+) 1380 WP_106046247.1 DNA repair protein RadA Machinery gene
  RAS18_RS00585 disA 107375..108457 (+) 1083 WP_010787418.1 DNA integrity scanning diadenylate cyclase DisA -
  RAS18_RS00590 - 108578..109678 (+) 1101 WP_061570389.1 PIN/TRAM domain-containing protein -
  RAS18_RS00595 ispD 109692..110390 (+) 699 WP_406621233.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RAS18_RS00600 ispF 110383..110859 (+) 477 WP_003328312.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49543.96 Da        Isoelectric Point: 8.2443

>NTDB_id=891999 RAS18_RS00580 WP_106046247.1 105992..107371(+) (radA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MAKSKTKFICQSCGYESAKWMGKCPGCGAWNTMTEETVKKTPANRRAAFAHSTQTVKKPSPITSIETSEEPRIKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSTHSVLYISGEESVKQTKLRADRLGINNQTLHVLAETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSIVASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPSDCIIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRLIIPAANLDGWTKPKGIEVVGVANVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=891999 RAS18_RS00580 WP_106046247.1 105992..107371(+) (radA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGGCTAAATCAAAAACGAAATTTATCTGCCAATCCTGCGGCTATGAATCCGCAAAGTGGATGGGGAAATGTCCAGGCTG
CGGAGCTTGGAACACAATGACAGAAGAAACAGTAAAAAAAACACCGGCTAATCGCAGAGCAGCTTTTGCACACTCTACCC
AAACCGTAAAGAAACCTTCACCTATCACATCAATAGAAACATCTGAAGAACCCCGAATTAAAACACAGCTTGGAGAATTT
AACAGAGTGCTGGGCGGCGGTGTTGTGAAGGGCTCACTTGTCTTAATTGGAGGAGATCCCGGTATTGGTAAGTCAACCTT
GCTGCTTCAAGTATCCGCTCAGTTATCAGACTCCACGCATAGTGTGCTCTACATTTCAGGCGAGGAATCTGTGAAACAAA
CGAAACTCAGAGCAGATCGCCTCGGTATTAATAACCAAACGTTACATGTTTTAGCTGAAACCGACATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCATTTGTGGTTGTTGACTCCATTCAGACGGTCTATCAAAGCGATATTACATCAGC
TCCGGGCAGTGTGTCTCAAGTCAGGGAGTGTACGGCAGAGCTGATGAGAATTGCCAAGACAAAGGGTATACCGATTTTTA
TCGTAGGACATGTAACAAAAGAAGGTTCAATTGCTGGTCCGAGACTGTTGGAACATATGGTTGATACTGTTCTTTACTTT
GAAGGAGAGCGACATCATACGTTCCGCATCTTGCGGGCAGTAAAAAACCGTTTCGGCTCTACAAATGAAATGGGCATTTT
CGAAATGCGGGAAGAGGGTCTGACAGAGGTGCTGAATCCTTCTGAAATCTTTCTTGAGGAACGATCAGCCGGAGCGGCAG
GTTCCAGCATAGTAGCATCTATGGAAGGCACCAGGCCGATTCTCGTGGAAATACAGGCCCTTATCTCACCGACCAGCTTT
GGGAATCCCCGGCGTATGGCCACGGGAATTGACCATAACAGAGTGTCACTGCTGATGGCTGTGTTAGAAAAAAGAGTCGG
ACTGCTGCTTCAAAATCAGGATGCGTATTTAAAGGTAGCAGGCGGCGTTAAGCTAGATGAACCGGCAATCGATCTCGCTG
TAGCTGTCAGTATTGCATCAAGCTTTAGAGATACACCGCCAAATCCTTCCGACTGCATTATAGGGGAAGTCGGTTTGACA
GGTGAGGTCCGCAGGGTATCCAGAATTGAACAGCGGGTGAAAGAAGCTGCTAAACTTGGATTTAAGCGTCTGATCATACC
TGCGGCGAATTTAGATGGATGGACAAAACCAAAAGGGATTGAGGTTGTCGGAGTAGCAAATGTTGCAGAAGCGCTTCGTA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

93.886

99.782

0.937
  radA Streptococcus mitis NCTC 12261

63.576

98.693

0.627
  radA Streptococcus pneumoniae Rx1

63.576

98.693

0.627
  radA Streptococcus pneumoniae D39

63.576

98.693

0.627
  radA Streptococcus pneumoniae R6

63.576

98.693

0.627
  radA Streptococcus pneumoniae TIGR4

63.576

98.693

0.627
  radA Streptococcus mitis SK321

63.355

98.693

0.625