Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RAS18_RS00245 Genome accession   NZ_CP136635
Coordinates   44588..44878 (-) Length   96 a.a.
NCBI ID   WP_087941801.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39588..49878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS00205 darA 39606..39935 (+) 330 WP_003328606.1 cyclic di-AMP receptor DarA -
  RAS18_RS00210 - 39948..40388 (+) 441 WP_106046268.1 YaaR family protein -
  RAS18_RS00215 holB 40400..41389 (+) 990 WP_106046267.1 DNA polymerase III subunit delta' -
  RAS18_RS00220 ricT 41392..42219 (+) 828 WP_061571110.1 competence/sporulation regulator complex protein RicT -
  RAS18_RS00225 yabA 42234..42593 (+) 360 WP_003328601.1 replication initiation-control protein YabA -
  RAS18_RS00230 - 42654..43397 (+) 744 WP_003328600.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RAS18_RS00235 - 43384..43683 (+) 300 WP_003328599.1 GIY-YIG nuclease family protein -
  RAS18_RS00240 rsmI 43658..44536 (+) 879 WP_406621220.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RAS18_RS00245 abrB 44588..44878 (-) 291 WP_087941801.1 transition state genes transcriptional regulator AbrB Regulator
  RAS18_RS00250 metG 45365..47359 (+) 1995 WP_406621221.1 methionine--tRNA ligase -
  RAS18_RS00255 - 47438..48205 (+) 768 WP_061571116.1 TatD family hydrolase -
  RAS18_RS00260 - 48363..49688 (+) 1326 WP_094231221.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10801.62 Da        Isoelectric Point: 6.3482

>NTDB_id=891997 RAS18_RS00245 WP_087941801.1 44588..44878(-) (abrB) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEG
AEQIIKEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=891997 RAS18_RS00245 WP_087941801.1 44588..44878(-) (abrB) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958