Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV27_RS19445 Genome accession   NZ_AP024890
Coordinates   991924..993018 (-) Length   364 a.a.
NCBI ID   WP_337969453.1    Uniprot ID   -
Organism   Vibrio pectenicida strain LMG 19642     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 986924..998018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV27_RS19435 glpD 987748..989280 (+) 1533 WP_125320982.1 glycerol-3-phosphate dehydrogenase -
  OCV27_RS19440 luxQ 989354..991921 (-) 2568 WP_125320983.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCV27_RS19445 luxP 991924..993018 (-) 1095 WP_337969453.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCV27_RS19450 - 993196..994335 (-) 1140 WP_125323449.1 conjugal transfer protein TraF -
  OCV27_RS19455 - 994517..994831 (-) 315 WP_125323062.1 GIY-YIG nuclease family protein -
  OCV27_RS19460 - 994832..995491 (-) 660 WP_125323063.1 YceH family protein -
  OCV27_RS19465 - 995521..995715 (-) 195 WP_125323064.1 hypothetical protein -
  OCV27_RS19470 - 995906..996229 (+) 324 WP_125323065.1 DUF496 family protein -
  OCV27_RS19475 glpK 996296..997813 (-) 1518 WP_125323066.1 glycerol kinase GlpK -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 40830.44 Da        Isoelectric Point: 6.3984

>NTDB_id=89195 OCV27_RS19445 WP_337969453.1 991924..993018(-) (luxP) [Vibrio pectenicida strain LMG 19642]
MLKVTLLSVVLVLPMPSCAHTTQVLSGYWQYDEYLDANPEEKVLTKALADTVRSQAVPISAKQSNPVSISVVYPGQQVSD
YWVRNIKAFEARLTELGINYEIKQVFTRPNLDVRQQSLSLLEAIQNKADYLIFTLDTTRHRKFIENVLSSTNTKLILQNI
TTPVRAWGEQKPFMYVGFDHVKGTHLLENYYKKIVPAGSRYSVLYFSEGYVSDARGDTFIEEMSHHDSYKLSSSFYTTAT
KESGFNAAIKAVEKDPNISFIYACSTDVALGATEALKKLKREDIIVNGWGGGSAELAALAKGELDVTAMRMNDDTGVAMA
EAIKWDLEGKETPNVYSGDFELVIKTDSHLKIDKLKQRAFRYSD

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=89195 OCV27_RS19445 WP_337969453.1 991924..993018(-) (luxP) [Vibrio pectenicida strain LMG 19642]
ATGCTAAAAGTGACTCTTTTGTCAGTAGTTCTCGTTTTACCTATGCCCAGTTGCGCACACACAACTCAAGTCCTCAGTGG
GTACTGGCAATATGATGAGTATCTAGATGCTAATCCAGAAGAGAAGGTTCTGACTAAAGCTTTGGCCGATACAGTAAGAA
GTCAAGCAGTACCGATTTCTGCCAAGCAATCTAACCCGGTATCAATTTCAGTTGTGTATCCCGGACAGCAAGTGTCAGAT
TATTGGGTAAGGAACATTAAAGCTTTTGAAGCACGCCTTACCGAGTTGGGGATAAACTATGAGATAAAGCAGGTTTTTAC
TCGGCCTAATCTAGATGTTAGACAGCAGAGTCTCTCACTGCTCGAAGCGATACAAAACAAAGCAGATTATTTGATTTTTA
CCTTAGATACCACTCGGCATCGAAAGTTTATTGAAAATGTTCTCAGTTCAACAAACACTAAGCTTATTTTACAAAATATA
ACCACACCTGTTAGAGCTTGGGGTGAGCAAAAGCCATTTATGTATGTTGGTTTTGACCATGTTAAAGGGACTCACTTACT
TGAAAATTATTACAAAAAAATTGTGCCCGCTGGTAGTCGCTACTCTGTTTTATATTTCTCTGAAGGCTATGTCAGTGATG
CTCGAGGTGATACGTTTATAGAAGAGATGAGCCATCATGATTCGTATAAACTATCTTCATCGTTCTATACAACAGCGACT
AAAGAATCTGGATTTAATGCAGCGATCAAAGCCGTAGAAAAAGATCCTAATATTTCATTTATTTATGCGTGTTCAACTGA
TGTTGCTCTTGGTGCTACAGAAGCACTTAAGAAATTAAAGCGAGAAGATATTATTGTCAACGGATGGGGAGGTGGCAGTG
CAGAGCTAGCAGCGCTCGCTAAAGGTGAATTAGATGTGACTGCAATGCGAATGAATGATGATACTGGGGTTGCAATGGCT
GAAGCAATAAAGTGGGACCTTGAAGGAAAAGAGACACCAAATGTTTATTCTGGGGACTTTGAACTTGTGATAAAAACAGA
TAGTCATTTGAAAATAGATAAATTAAAGCAAAGAGCTTTTAGGTACTCGGATTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

100

0.632

Multiple sequence alignment