Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV27_RS18785 Genome accession   NZ_AP024890
Coordinates   856531..857706 (-) Length   391 a.a.
NCBI ID   WP_125323484.1    Uniprot ID   A0A3R9E615
Organism   Vibrio pectenicida strain LMG 19642     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 851531..862706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV27_RS18770 - 853398..854048 (-) 651 WP_125323458.1 hypothetical protein -
  OCV27_RS20835 - 854165..854275 (-) 111 Protein_769 tellurium resistance protein -
  OCV27_RS18775 - 854452..855972 (+) 1521 WP_337969441.1 HAMP domain-containing sensor histidine kinase -
  OCV27_RS18780 - 856035..856496 (+) 462 WP_337969442.1 response regulator -
  OCV27_RS18785 cqsA 856531..857706 (-) 1176 WP_125323484.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV27_RS18790 - 857896..858843 (-) 948 WP_125323491.1 TDT family transporter -
  OCV27_RS18795 clcA 858951..860351 (-) 1401 WP_125323267.1 H(+)/Cl(-) exchange transporter ClcA -
  OCV27_RS18800 - 860793..861764 (-) 972 WP_125323266.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 44017.51 Da        Isoelectric Point: 8.4670

>NTDB_id=89194 OCV27_RS18785 WP_125323484.1 856531..857706(-) (cqsA) [Vibrio pectenicida strain LMG 19642]
MKQIKNNSHLPDFISKQLDFYLDDLINKNNNGKHLVLGKKPSRQDITLQNNDYLDISNNSEIVEHHINAIRKHTSSPIMS
GIFLRDINTRPEVEQTLAEYVGFQSCLLSQSGWTANIALLQTICNENTIVYIDFFAHMSLWEGSRIAGANIHPFMHNNVN
HLEKLIKRHGPGIILVDSIYSTIGSIAPLENIVMLSKKYGCALVVDESHSLGTHGNEGSGLVNALGLTSHVDFMTASLAK
TFAYRAGAIFCNNKANECIPFVAYPSIFSSAMLPFELDRLDKTMQVIRKKDKDREYLHKISKYIRNKLSVIGLTIRSESQ
IIAIETGSECNTEKVRDFLEDNGIFGSVFCRPATPYKRNIIRFSINSSISYFQAEKIISTCRKALDKNILK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=89194 OCV27_RS18785 WP_125323484.1 856531..857706(-) (cqsA) [Vibrio pectenicida strain LMG 19642]
ATGAAACAAATTAAAAATAATTCACATCTACCTGATTTTATAAGCAAACAGCTGGATTTCTATCTTGATGATCTTATTAA
TAAAAATAATAATGGAAAGCATCTAGTCTTAGGGAAGAAGCCATCACGACAAGATATAACTCTTCAAAATAATGACTATT
TGGATATATCAAATAACTCAGAAATAGTAGAACATCATATAAATGCAATTCGAAAACACACCTCTTCACCTATTATGTCA
GGAATATTTCTCCGTGATATAAACACCAGACCAGAAGTTGAGCAAACACTAGCAGAATATGTAGGTTTTCAGTCCTGTCT
ACTTTCACAATCTGGTTGGACTGCAAACATTGCACTATTACAAACCATTTGTAACGAAAACACCATTGTTTATATTGATT
TTTTTGCACATATGTCATTATGGGAAGGCTCAAGAATTGCGGGCGCTAATATTCATCCATTCATGCACAACAATGTAAAC
CACCTTGAAAAGCTTATTAAGCGCCATGGTCCCGGGATTATTTTAGTCGATTCAATCTACAGCACAATCGGTAGTATTGC
CCCTTTGGAAAATATTGTTATGTTGTCTAAAAAATATGGATGTGCACTTGTTGTAGATGAATCACATTCATTAGGTACCC
ATGGTAATGAAGGCTCTGGGCTCGTAAACGCCTTGGGACTAACCAGTCATGTAGACTTCATGACTGCAAGTTTAGCCAAA
ACATTTGCTTATAGGGCTGGAGCTATCTTTTGTAATAACAAAGCTAATGAATGTATCCCATTTGTAGCGTATCCATCTAT
TTTCAGTTCTGCAATGTTACCTTTTGAACTGGATAGACTTGATAAAACAATGCAAGTTATACGAAAAAAAGATAAAGATA
GAGAGTACTTGCATAAAATAAGTAAATACATTCGTAATAAGCTATCTGTTATTGGATTAACCATTAGAAGTGAATCTCAA
ATAATTGCTATTGAAACAGGGAGCGAATGTAATACTGAAAAAGTAAGGGATTTCCTTGAGGACAATGGAATTTTTGGCTC
TGTATTCTGCCGACCAGCGACCCCATACAAAAGGAATATCATTAGATTTTCTATAAATAGTTCAATATCATATTTTCAAG
CGGAAAAAATAATAAGTACATGCAGAAAGGCATTAGATAAAAATATATTAAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9E615

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.268

97.442

0.568

Multiple sequence alignment