Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PA12_RS27400 Genome accession   NZ_CP136598
Coordinates   5835233..5835790 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain PA12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5830233..5840790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA12_RS27380 (PA12_gene5338) pilR 5831509..5832846 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PA12_RS27385 (PA12_gene5339) thiO 5832892..5833986 (-) 1095 WP_191519341.1 glycine oxidase ThiO -
  PA12_RS27390 (PA12_gene5340) - 5834121..5834630 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  PA12_RS27395 (PA12_gene5341) - 5834736..5835242 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  PA12_RS27400 (PA12_gene5342) pilV 5835233..5835790 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PA12_RS27405 (PA12_gene5343) pilW 5835787..5836611 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  PA12_RS27410 (PA12_gene5344) pilX 5836608..5837195 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PA12_RS27415 (PA12_gene5345) pilY1 5837207..5840698 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=891882 PA12_RS27400 WP_003094697.1 5835233..5835790(+) (pilV) [Pseudomonas aeruginosa strain PA12]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=891882 PA12_RS27400 WP_003094697.1 5835233..5835790(+) (pilV) [Pseudomonas aeruginosa strain PA12]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAAGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACATCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978