Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV27_RS12900 Genome accession   NZ_AP024889
Coordinates   2822314..2822832 (-) Length   172 a.a.
NCBI ID   WP_125319906.1    Uniprot ID   A0A427U6U5
Organism   Vibrio pectenicida strain LMG 19642     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2817314..2827832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV27_RS12895 - 2821835..2822275 (+) 441 WP_420919489.1 RDD family protein -
  OCV27_RS12900 luxS 2822314..2822832 (-) 519 WP_125319906.1 S-ribosylhomocysteine lyase Regulator
  OCV27_RS12905 gshA 2823223..2824791 (-) 1569 WP_125319961.1 glutamate--cysteine ligase -
  OCV27_RS12910 - 2824891..2827740 (-) 2850 WP_125319907.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19031.82 Da        Isoelectric Point: 4.8519

>NTDB_id=89186 OCV27_RS12900 WP_125319906.1 2822314..2822832(-) (luxS) [Vibrio pectenicida strain LMG 19642]
MPLLDSFTVDHTRMNAPSVRVAKMMSTPRGDTITVFDLRFTAPNKAILSEKGIHTLEHLYAGFMRNHLNGNKIEIIDISP
MGCRTGFYMSLVGTPSEEFVAKGWESAMYDVLKVESQNQIPELNEYQCGTAAMHSLAEAKQIAQGIIDEGIEVNKNDELA
LPESMLKELAVG

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89186 OCV27_RS12900 WP_125319906.1 2822314..2822832(-) (luxS) [Vibrio pectenicida strain LMG 19642]
ATGCCATTGCTAGATAGTTTTACTGTTGATCATACTCGAATGAATGCACCTTCGGTTAGAGTTGCAAAAATGATGAGTAC
ACCAAGGGGGGATACAATTACTGTGTTTGATTTACGTTTTACAGCTCCTAATAAAGCGATTCTTTCTGAAAAAGGTATCC
ATACACTAGAGCATTTGTATGCGGGGTTTATGCGCAATCATCTCAATGGAAATAAAATTGAGATAATTGATATTTCTCCA
ATGGGATGTAGAACCGGATTTTACATGAGCTTAGTTGGTACGCCTTCAGAAGAATTTGTTGCCAAGGGGTGGGAATCAGC
CATGTATGATGTACTGAAAGTCGAAAGCCAAAACCAAATTCCAGAATTAAATGAGTATCAATGCGGTACTGCTGCAATGC
ATTCTTTAGCCGAGGCGAAGCAAATTGCTCAAGGTATTATTGATGAGGGTATAGAGGTAAATAAGAATGATGAACTAGCC
CTGCCGGAATCAATGCTAAAAGAGTTAGCAGTAGGTTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427U6U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

81.287

99.419

0.808

Multiple sequence alignment