Detailed information NTG0089185

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCV27_RS12710
• Genome accession: NZ_AP024889
• Coordinates: 2787295..2788278 (-)
• Length: 327 a.a.
• NCBI ID: WP_125319710.1
• Uniprot ID: A0A427U7G6
• Organism: Vibrio pectenicida strain LMG 19642
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2782295..2793278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV27_RS12685	rimM	2782429..2782977 (-)	549	WP_125319705.1	ribosome maturation factor RimM	-
OCV27_RS12690	rpsP	2783000..2783248 (-)	249	WP_125319706.1	30S ribosomal protein S16	-
OCV27_RS12695	ffh	2783475..2784845 (-)	1371	WP_125319707.1	signal recognition particle protein	-
OCV27_RS12700	-	2785056..2785850 (+)	795	WP_125319708.1	cytochrome C assembly family protein	-
OCV27_RS12705	-	2785973..2787241 (+)	1269	WP_125319709.1	HlyC/CorC family transporter	-
OCV27_RS12710	rpoS	2787295..2788278 (-)	984	WP_125319710.1	RNA polymerase sigma factor RpoS	Regulator
OCV27_RS12715	-	2788345..2789262 (-)	918	WP_125319711.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCV27_RS12720	-	2789265..2789891 (-)	627	WP_125319712.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCV27_RS12725	surE	2789888..2790652 (-)	765	WP_125319713.1	5'/3'-nucleotidase SurE	-
OCV27_RS12730	truD	2790649..2791695 (-)	1047	WP_125319735.1	tRNA pseudouridine(13) synthase TruD	-
OCV27_RS12735	ispF	2791726..2792202 (-)	477	WP_125319714.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCV27_RS12740	ispD	2792199..2792909 (-)	711	WP_125319715.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCV27_RS12745	ftsB	2792912..2793190 (-)	279	WP_125319736.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37484.42 Da
• Isoelectric Point: 4.5459

>NTDB_id=89185 OCV27_RS12710 WP_125319710.1 2787295..2788278(-) (rpoS) [Vibrio pectenicida strain LMG 19642]
MSISNAATKVEELELEVEMESTQANEEKTTNSTQAEETKEEFEVSTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIALQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSINEE

Nucleotide

• Length: 984 bp

>NTDB_id=89185 OCV27_RS12710 WP_125319710.1 2787295..2788278(-) (rpoS) [Vibrio pectenicida strain LMG 19642]
ATGAGTATAAGCAATGCAGCAACGAAAGTCGAAGAACTAGAGCTTGAAGTAGAAATGGAATCAACTCAAGCTAATGAAGA
AAAAACTACAAATAGCACCCAAGCGGAGGAAACTAAAGAAGAGTTTGAGGTATCCACCAAAAGCTTGGACGCGACCCAGC
TTTATTTAGGAGAAATTGGTTTTTCACCACTACTTACTGCAGAAGAAGAAGTGTTATATGCACGGCGAGCTCTTAGAGGA
GATGAAGCTGCACGCAAGCGTATGATTGAAAGTAACCTGCGCTTGGTGGTTAAAATCTCACGCCGATACAGTAATCGTGG
CCTAGCATTACTTGATCTTATCGAAGAAGGTAATCTTGGTTTAATACGTGCTGTTGAAAAATTTGATCCTGAAAGAGGTT
TTAGGTTCTCAACTTACGCGACTTGGTGGATAAGACAGACTATCGAGCGTGCTCTTATGAATCAAACTCGTACTATCCGC
TTACCCATTCATGTTGTTAAAGAACTCAATATATATCTTCGTACTGCTAGGGAGCTATCTCAAAAACTTGATCACGAACC
GACGGCAGAAGAGATTGCTTTACAGCTTGATAAGCCAGTTGATGATGTTAGCAAAATGCTACGTCTCAATGAGCGTATCA
GCTCAGTAGATACCCCAATTGGCGGTGATGGTGAGAAAGCACTTCTTGATATTATCCCTGATGTTAATAACTCAGACCCC
GAAGTTTCCACTCAGGACGATGATATTAAATCTTCATTGATTGACTGGCTTGATGAGCTTAATCCAAAGCAGAAAGAAGT
TCTTGCTCGTCGTTTTGGTTTGCTAGGTTATGAACCCTCAACGTTAGAGGAGGTTGGGCGTGAGATTAACCTAACTCGAG
AGCGAGTACGCCAGATACAGGTTGAAGGCCTACGTCGTCTGCGGGAAATCCTTATTAAACAAGGACTGAATATGGAGAGC
TTATTCAGTATTAATGAGGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A427U7G6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.686	100	0.847