Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAEU35_RS06990 Genome accession   NZ_CP152294
Coordinates   1419187..1419942 (-) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis strain Q13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1414187..1424942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS06970 - 1414646..1415626 (+) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -
  AAEU35_RS06975 - 1415619..1417217 (+) 1599 WP_021723187.1 2-oxo acid dehydrogenase subunit E2 -
  AAEU35_RS06980 lpdA 1417411..1418829 (+) 1419 WP_017863949.1 dihydrolipoyl dehydrogenase -
  AAEU35_RS06985 - 1418900..1419073 (-) 174 WP_021214949.1 helix-turn-helix transcriptional regulator -
  AAEU35_RS06990 recO 1419187..1419942 (-) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  AAEU35_RS06995 - 1420041..1421216 (-) 1176 WP_058222953.1 pyridoxal phosphate-dependent aminotransferase -
  AAEU35_RS07005 - 1421681..1422202 (-) 522 WP_058222954.1 N-acetyltransferase -
  AAEU35_RS07010 - 1422412..1424034 (+) 1623 WP_058222955.1 SulP family inorganic anion transporter -
  AAEU35_RS07015 - 1424115..1424357 (-) 243 WP_003132213.1 TM2 domain-containing protein -
  AAEU35_RS07020 - 1424434..1424883 (-) 450 WP_047205962.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=891816 AAEU35_RS06990 WP_003132217.1 1419187..1419942(-) (recO) [Lactococcus lactis strain Q13]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=891816 AAEU35_RS06990 WP_003132217.1 1419187..1419942(-) (recO) [Lactococcus lactis strain Q13]
ATGCGTGATGCCGAAACTCAAGGTCTAGTACTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATACGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534