Detailed information NTG0089181

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCV27_RS12410
• Genome accession: NZ_AP024889
• Coordinates: 2715626..2719012 (+)
• Length: 1128 a.a.
• NCBI ID: WP_125321416.1
• Uniprot ID: A0A3R9L1Q1
• Organism: Vibrio pectenicida strain LMG 19642
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2710626..2724012

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV27_RS12390	erpA	2711068..2711409 (-)	342	WP_125321440.1	iron-sulfur cluster insertion protein ErpA	-
OCV27_RS12395	hemL	2711665..2712960 (+)	1296	WP_125321422.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCV27_RS12400	-	2713248..2714333 (+)	1086	WP_125321420.1	AI-2E family transporter	-
OCV27_RS12405	rsmC	2714409..2715431 (+)	1023	WP_125321418.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCV27_RS12410	chiS	2715626..2719012 (+)	3387	WP_125321416.1	response regulator	Regulator
OCV27_RS12415	-	2719598..2721277 (+)	1680	WP_125321414.1	ABC transporter substrate-binding protein	-
OCV27_RS12420	-	2721439..2722425 (+)	987	WP_125321412.1	ABC transporter permease	-
OCV27_RS12425	-	2722428..2723453 (+)	1026	WP_125321438.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 128369.35 Da
• Isoelectric Point: 6.4654

>NTDB_id=89181 OCV27_RS12410 WP_125321416.1 2715626..2719012(+) (chiS) [Vibrio pectenicida strain LMG 19642]
MFKLYKKQRFKRLKHTLMLAFMILSITPLTVVALFFLNSHSKDLQEQSTSHLVSVRDNKQQQLVDYMAAKQSEVMGFVRS
ELAYASGGRFYGLVNAFRSLGIDIDQARDYAQQRYVLGSGDQIKTSILPQSSLYNGTERYRLLHKRYHRAYVELLKRSDF
DDILLVDLEGNVTYSTFKHDNFGTNLLTGRYKDSHLGETFHKLKAEVTKERQTNEEYTPVIVSDFKNDNDKQVAWIGAPI
IQQGYLHSYAMFRLPNNEITKLISDTKDISEMRTLLVGEDHLSRTLSIQQQDIDNSYQVVEQAFNGQTKVDTYINKSGDG
VIAAYSPISFNDVNWAIIVEVPEKVAFSRIHQLETIFILAMLCAIVLVILASHYLSQFITAPLLKLTWTAEKVSAGNLDA
DIVNTQRKDEIGRLAVSFKRMQRSIRDKILLIEEQNKELEKNLQLIQKQNEELQLANRLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPVTADHKYQLNIIVNSGQRLATLVDDLLDYHKMRYGKLDIEARAVDISGAARLVLELSSHLIGTKQIRV
INQIPEEQLWACADPQRLEQVLYNLIGNAIKYTNEGKIVISACQVDDNIRVQVVDTGQGIPANQLEHIFEPLTQANSDNG
RYQQGAGLGLSICRQLIDLMNGHLYVSSQPMVGTTFSFTLPIPTSQQIEDTHHTQSIHFQAPEVIKIEPFEHSTLLEDSQ
APLLLVVDDEPVNLRILDSFLRLEGYRIRTAQNGEEAIEAIRDEKPELMLLDIMMPGMSGYQVCEAIRKQYDHAQLPVIM
LTALNQPDDRVRGFEAGTNDYLSKPFNKQELAARIKAHLTASKAEQRRVENQQLKGEIKQRAKVEASLLETQGRLLEQLE
SAPEAIICLREDNKIRFTNEAASLLFRRTAEQLKRSNADELISRKFLEVKKAHYCGPIDVYVDEVRQSLSADIVSLPKNS
GFKSMYIFDVGGSVNTTRLNHLETAVEALSSYAFEGDKAKFLELKELGGEFTHLVERGTNSEKSKQEMMRDILVDSMNSG
LAYWERVTGQSKFDFAEQSGLWRVYLDRSTLQTRTLDKYLRLETLPKTPRWRTVLNSLEYILEHCKEMTPERSHIENLHD
KLQHLLTN

Nucleotide

• Length: 3387 bp

>NTDB_id=89181 OCV27_RS12410 WP_125321416.1 2715626..2719012(+) (chiS) [Vibrio pectenicida strain LMG 19642]
ATGTTTAAGTTATATAAAAAACAAAGATTTAAACGCTTAAAGCACACTCTAATGCTAGCTTTTATGATACTAAGTATCAC
TCCTCTTACTGTTGTTGCTCTGTTTTTTTTGAATTCTCATAGCAAAGATCTCCAAGAACAAAGTACTTCACATTTAGTCT
CTGTTCGTGACAATAAGCAACAACAGCTCGTAGACTATATGGCAGCTAAACAATCAGAAGTGATGGGGTTCGTTCGCTCT
GAATTAGCCTATGCCAGTGGTGGGCGCTTTTATGGTTTGGTCAATGCCTTCCGTAGCTTGGGTATAGATATAGACCAAGC
CCGTGACTATGCTCAGCAACGCTATGTCTTAGGTTCTGGCGATCAAATCAAGACTTCAATCCTTCCTCAATCTAGCCTGT
ATAATGGTACTGAACGATATCGCTTACTGCATAAGCGCTATCATAGAGCTTATGTCGAACTTCTAAAACGCTCTGATTTT
GACGATATTCTACTGGTAGATTTAGAAGGAAACGTCACCTATTCAACTTTTAAACATGATAACTTTGGTACCAACCTACT
TACAGGACGCTACAAAGACTCTCATCTAGGAGAGACCTTTCATAAACTAAAGGCTGAAGTGACTAAAGAACGTCAAACAA
ATGAGGAATACACGCCTGTTATCGTCTCCGACTTCAAAAACGACAACGACAAACAAGTTGCTTGGATAGGCGCCCCAATT
ATCCAACAAGGCTACCTCCATAGCTATGCCATGTTCCGCCTCCCTAATAACGAAATTACTAAACTTATATCTGATACAAA
AGATATTTCCGAGATGAGAACCTTGCTCGTCGGTGAAGATCACTTGTCTAGAACGCTTTCTATACAGCAGCAAGATATCG
ACAATAGTTATCAAGTTGTTGAACAGGCATTTAATGGACAAACCAAAGTTGATACATACATCAATAAGTCAGGTGACGGT
GTTATTGCAGCCTATAGCCCCATTTCTTTTAATGACGTAAATTGGGCAATTATCGTTGAAGTTCCTGAAAAAGTAGCATT
CTCCCGTATCCATCAACTTGAAACCATTTTTATCTTGGCCATGCTTTGTGCCATAGTGTTAGTGATTCTTGCCTCCCACT
ACCTTTCTCAATTTATCACTGCCCCTTTACTCAAACTGACGTGGACAGCAGAAAAAGTATCAGCAGGAAATCTTGATGCT
GATATTGTTAATACACAAAGAAAAGATGAAATAGGTCGACTTGCAGTCAGTTTCAAACGTATGCAACGTTCAATACGCGA
CAAAATATTGTTGATTGAAGAACAAAACAAAGAATTAGAAAAAAACCTTCAGCTAATCCAAAAACAAAATGAAGAGCTAC
AACTTGCTAACAGACTTAAAGATGAGTTTTTAGCAACAACATCACATGAATTAAGAACTCCACTACATGGTATGGTAGGT
ATTGCGGAAGCACTTATCTCTGGAGCCAACGGTCCAGTAACAGCAGATCACAAATACCAACTTAATATTATTGTCAATAG
CGGTCAGCGACTGGCGACTCTGGTTGATGATTTACTCGATTACCACAAAATGCGTTATGGAAAGCTAGATATTGAAGCTA
GGGCCGTTGATATTTCCGGTGCAGCTCGTTTAGTTTTAGAACTATCTTCACATCTTATCGGTACTAAACAAATCCGAGTG
ATTAATCAAATACCAGAAGAACAGCTATGGGCATGTGCCGATCCACAGCGCCTCGAACAAGTACTCTATAACCTGATTGG
CAACGCCATCAAATATACCAATGAAGGTAAAATTGTCATCTCAGCTTGCCAAGTAGATGACAATATTCGTGTCCAAGTCG
TAGACACTGGACAAGGTATTCCAGCAAACCAGTTAGAGCATATATTTGAACCACTGACTCAAGCAAACAGTGATAATGGG
CGCTATCAGCAAGGAGCTGGGCTTGGCCTATCTATTTGTCGTCAATTGATCGACTTAATGAATGGTCATTTGTATGTGAG
TAGTCAACCCATGGTAGGGACAACCTTTAGCTTTACCTTGCCAATACCAACATCACAACAAATAGAAGACACTCACCATA
CCCAAAGTATTCACTTTCAAGCTCCCGAAGTTATTAAGATCGAACCCTTTGAGCATTCCACGTTACTTGAAGACTCGCAA
GCCCCCCTACTTTTAGTGGTTGATGATGAGCCAGTGAATTTACGTATTTTAGACAGTTTTTTACGCTTAGAAGGATATAG
AATACGAACAGCCCAAAATGGTGAAGAGGCTATAGAGGCTATTCGGGATGAAAAACCAGAACTAATGCTACTTGATATCA
TGATGCCAGGAATGAGCGGCTACCAAGTTTGTGAAGCTATCCGTAAACAGTATGACCATGCTCAGTTACCAGTCATAATG
TTAACCGCTTTGAATCAACCAGATGACCGAGTTAGAGGCTTTGAGGCCGGCACTAATGATTATTTATCCAAGCCCTTCAA
CAAGCAGGAGCTTGCCGCTCGAATTAAAGCACATTTAACTGCAAGTAAAGCAGAGCAACGTCGAGTTGAAAATCAACAAT
TAAAAGGTGAGATAAAACAGCGTGCCAAGGTTGAAGCCAGTTTGCTCGAAACACAAGGTCGCTTGCTCGAACAACTAGAG
TCAGCACCGGAAGCTATTATATGCCTTAGAGAGGATAATAAAATCCGCTTTACTAACGAAGCAGCTTCACTTTTGTTTAG
GCGTACAGCAGAGCAACTAAAACGCTCAAATGCGGATGAACTCATATCTCGAAAATTTCTTGAAGTTAAAAAAGCTCACT
ATTGCGGACCTATAGATGTATATGTAGACGAAGTTCGCCAATCTCTCTCTGCTGATATTGTTAGTCTTCCAAAAAATTCA
GGATTTAAATCCATGTATATTTTTGATGTAGGAGGAAGCGTAAACACAACTCGATTGAATCATTTAGAAACAGCAGTCGA
AGCGCTATCTAGCTACGCTTTTGAAGGCGATAAGGCCAAATTTCTCGAACTTAAAGAGCTTGGAGGCGAATTTACTCATC
TAGTGGAAAGAGGCACTAATAGTGAGAAATCGAAACAAGAAATGATGCGCGACATACTCGTAGACTCTATGAATAGTGGG
TTAGCATACTGGGAAAGAGTAACTGGCCAAAGCAAATTTGACTTCGCCGAACAAAGTGGTTTGTGGCGCGTATACCTAGA
TCGCAGTACATTACAGACTCGCACACTAGATAAGTACCTACGGCTAGAAACATTACCCAAAACACCTCGTTGGCGGACCG
TGTTAAATTCACTAGAGTACATTCTTGAACATTGTAAAGAAATGACTCCTGAGCGAAGTCATATAGAAAACTTACATGAC
AAACTTCAACATTTGCTCACTAACTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (725-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• HAMP domain (HAMP) (376-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

3D structure

• AlphaFold DB: A0A3R9L1Q1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	71.897	100	0.719