Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AAEU35_RS05085 Genome accession   NZ_CP152294
Coordinates   1047407..1048123 (+) Length   238 a.a.
NCBI ID   WP_021466934.1    Uniprot ID   -
Organism   Lactococcus lactis strain Q13     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1042407..1053123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS05070 - 1042732..1045041 (-) 2310 WP_058223343.1 glycoside hydrolase family 65 protein -
  AAEU35_RS05075 - 1045109..1046674 (-) 1566 WP_025016545.1 PTS transporter subunit EIIC -
  AAEU35_RS05080 - 1046811..1047296 (-) 486 WP_012897247.1 glucose PTS transporter subunit IIA -
  AAEU35_RS05085 treR 1047407..1048123 (+) 717 WP_021466934.1 trehalose operon repressor Regulator
  AAEU35_RS05090 glmM 1048200..1049558 (-) 1359 WP_003131539.1 phosphoglucosamine mutase -
  AAEU35_RS05095 - 1049604..1050563 (-) 960 WP_012897245.1 CdaR family protein -
  AAEU35_RS05100 cdaA 1050553..1051431 (-) 879 WP_003131542.1 diadenylate cyclase CdaA -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27906.57 Da        Isoelectric Point: 6.4168

>NTDB_id=891801 AAEU35_RS05085 WP_021466934.1 1047407..1048123(+) (treR) [Lactococcus lactis strain Q13]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDNLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=891801 AAEU35_RS05085 WP_021466934.1 1047407..1048123(+) (treR) [Lactococcus lactis strain Q13]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATAATTTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCTTGCGAAGATGA
CTTTAAATACCTTGACTTAAACCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGTCATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462