Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   AAEU35_RS01100 Genome accession   NZ_CP152294
Coordinates   231050..232066 (+) Length   338 a.a.
NCBI ID   WP_342630353.1    Uniprot ID   -
Organism   Lactococcus lactis strain Q13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 226050..237066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS01075 - 226141..226620 (+) 480 WP_058223180.1 nucleoside 2-deoxyribosyltransferase -
  AAEU35_RS01080 - 226685..227737 (+) 1053 WP_023189235.1 BMP family protein -
  AAEU35_RS01085 - 227917..228840 (+) 924 WP_023189236.1 FAD:protein FMN transferase -
  AAEU35_RS01090 - 228856..229461 (+) 606 WP_025017080.1 NADPH-dependent FMN reductase -
  AAEU35_RS01095 - 229515..230726 (+) 1212 WP_081213518.1 NAD(P)H-dependent oxidoreductase -
  AAEU35_RS01100 xerS 231050..232066 (+) 1017 WP_342630353.1 tyrosine recombinase XerS Machinery gene
  AAEU35_RS01105 - 232972..233340 (+) 369 WP_342630354.1 hypothetical protein -
  AAEU35_RS01110 - 233645..233890 (+) 246 Protein_218 prealbumin-like fold domain-containing protein -
  AAEU35_RS01115 - 234152..235966 (+) 1815 WP_342630383.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38923.40 Da        Isoelectric Point: 9.6149

>NTDB_id=891777 AAEU35_RS01100 WP_342630353.1 231050..232066(+) (xerS) [Lactococcus lactis strain Q13]
MNPLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMSENNITTHANIKEITLKEMENVTKRELEAFVLHERLRLE
SKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDSNGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLFLGDETKAFLEFV
EQDYEKSVSNRAKTSFKKNKKRDLAILSFFLSSGLRCAELVGINLTDLNLETGKVSVMRKEGKKDVVPIAHFSHKYITDY
YEARSSLNTDVEALFITDYNQTIRKISNASINKLVAKYSEAYKVRVTPHTRHTFATRLYNVSHSQVLVSNQLGHSSTKPT
ELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=891777 AAEU35_RS01100 WP_342630353.1 231050..232066(+) (xerS) [Lactococcus lactis strain Q13]
TTGAACCCTCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCAGTCTAAGGACACTGTACCGCTGAGTATTGCCTCTAT
TTACTCTTACTGCTTAGAGTTCAGGAAATACTTGAAATGGATGAGTGAAAATAACATAACGACCCATGCTAACATCAAAG
AAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTAGAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAA
TCAAAATGTGGTTCTAATACACATACATCAGCATTAAATCGAACAATTGCTGCAATAAAGAGCCTATATAATTATCTTTG
CGAACAAACCGAAGATAGTAATGGCAATACTTACATGACTAGAAATGTTAGCCGTTTAATTCATATCCGAAAAAAAAGCG
AAACCTTACATTACCGTGCGGCTCAATTGGAAGGTAAACTATTCCTAGGAGATGAAACCAAAGCCTTTTTAGAATTTGTT
GAGCAAGACTACGAGAAGTCTGTCAGTAATCGTGCGAAAACAAGTTTCAAAAAAAATAAAAAAAGAGATTTAGCCATACT
AAGCTTCTTTTTATCTTCTGGGTTACGTTGTGCGGAACTTGTAGGAATCAATCTAACTGATTTAAACCTTGAAACTGGGA
AAGTGAGTGTGATGCGAAAAGAAGGAAAGAAGGATGTAGTGCCAATTGCTCATTTTTCGCATAAATATATAACAGATTAT
TATGAGGCAAGAAGTAGCTTAAATACTGATGTAGAAGCTTTATTTATCACGGACTATAATCAAACAATTAGAAAAATTTC
TAATGCATCGATAAATAAGCTAGTCGCAAAGTATTCAGAAGCCTATAAAGTTAGAGTAACCCCTCATACTAGGCATACAT
TCGCAACAAGGCTCTATAATGTCAGTCACTCTCAAGTCCTTGTCAGCAACCAATTAGGACATTCTTCAACCAAACCAACT
GAGTTATATACCCATATTGTCAGTGCTGAAGCTAAAGATGCGTTAAGAAAGTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(173-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.19

100

0.459