Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RZV17_RS15395 Genome accession   NZ_CP136580
Coordinates   3633653..3635047 (+) Length   464 a.a.
NCBI ID   WP_355604735.1    Uniprot ID   -
Organism   Xanthomonas cannabis strain DAR41331     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3628675..3641520 3633653..3635047 within 0


Gene organization within MGE regions


Location: 3628675..3641520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV17_RS15370 (RZV17_15325) - 3628675..3629121 (-) 447 WP_355604729.1 hypothetical protein -
  RZV17_RS15375 (RZV17_15330) sucD 3629191..3630066 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  RZV17_RS15380 (RZV17_15335) sucC 3630091..3631260 (-) 1170 WP_039405518.1 ADP-forming succinate--CoA ligase subunit beta -
  RZV17_RS15385 (RZV17_15340) - 3631493..3633106 (+) 1614 WP_047695066.1 PAS domain-containing sensor histidine kinase -
  RZV17_RS15390 (RZV17_15345) - 3633195..3633431 (+) 237 WP_355604732.1 hypothetical protein -
  RZV17_RS15395 (RZV17_15350) pilR 3633653..3635047 (+) 1395 WP_355604735.1 sigma-54 dependent transcriptional regulator Regulator
  RZV17_RS15400 (RZV17_15355) pilB 3635702..3637438 (-) 1737 WP_355604738.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RZV17_RS15405 (RZV17_15360) - 3637480..3637899 (-) 420 WP_317718955.1 pilin -
  RZV17_RS15410 (RZV17_15365) - 3637955..3638374 (-) 420 WP_317718956.1 pilin -
  RZV17_RS15415 (RZV17_15370) pilC 3638754..3640013 (+) 1260 WP_355604742.1 type II secretion system F family protein Machinery gene
  RZV17_RS15420 (RZV17_15375) - 3640020..3640883 (+) 864 WP_046343941.1 A24 family peptidase -
  RZV17_RS15425 (RZV17_15380) coaE 3640897..3641520 (+) 624 WP_355604745.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50194.57 Da        Isoelectric Point: 6.4497

>NTDB_id=891701 RZV17_RS15395 WP_355604735.1 3633653..3635047(+) (pilR) [Xanthomonas cannabis strain DAR41331]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPTPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAAAPGSAA
VEPREAVHDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=891701 RZV17_RS15395 WP_355604735.1 3633653..3635047(+) (pilR) [Xanthomonas cannabis strain DAR41331]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGAGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGTTACTGGCCAACAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAGGCACTACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTGAGCAAGCCGGT
GGACATCGGCGTGTTGCGTGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCACCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCTTGCTGGGCGATTCGACCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCGCCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTGGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGCCCCTTCGTGCCGGTCAACTGCGGCGCCATCCCGGCCGAATTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCGGGCCTGTTCCAGGCCGCACACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGC
CTCGGGCGAAACCCTGGTGGACGTCCGCATCCTGTCGGCTACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TCCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTCCCACCACTGCGCGAACGCGGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCCCGGCTGGCGCATAGCCATGGCCGCCCTATCCCGCTGCTGACGCCCTCGGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTAGCCCTGGCCGAGG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCGCCCCCGGCAGCGCCGCC
GTGGAACCGCGCGAAGCCGTCCACGACATCGACCCGGCGTCCGCCGCACTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGTATCACGTTTCGGGCGT
TGCGGTACAAGTTGAAGAAGCTTGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.715

99.784

0.636
  pilR Acinetobacter baumannii strain A118

49.569

100

0.496