Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   AAF758_RS08610 Genome accession   NZ_CP152119
Coordinates   1750888..1751928 (-) Length   346 a.a.
NCBI ID   WP_012027749.1    Uniprot ID   -
Organism   Streptococcus suis strain Ss2301     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1745888..1756928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF758_RS08580 (AAF758_08580) - 1746544..1746852 (-) 309 WP_012027746.1 YlxQ-related RNA-binding protein -
  AAF758_RS08585 (AAF758_08585) - 1746839..1747135 (-) 297 WP_002942375.1 YlxR family protein -
  AAF758_RS08590 (AAF758_08590) nusA 1747152..1748294 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  AAF758_RS08595 (AAF758_08595) rimP 1748368..1748838 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  AAF758_RS08600 (AAF758_08600) trmB 1749409..1750047 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AAF758_RS08605 (AAF758_08605) - 1750044..1750838 (-) 795 WP_002942360.1 phosphotransferase family protein -
  AAF758_RS08610 (AAF758_08610) pptB 1750888..1751928 (-) 1041 WP_012027749.1 ABC transporter permease Regulator
  AAF758_RS08615 (AAF758_08615) pptA 1751925..1752659 (-) 735 WP_012027751.1 ABC transporter ATP-binding protein Regulator
  AAF758_RS08620 (AAF758_08620) - 1752722..1753135 (+) 414 WP_012027752.1 HIT family protein -
  AAF758_RS08625 (AAF758_08625) - 1753137..1753439 (+) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  AAF758_RS08630 (AAF758_08630) - 1753548..1754741 (-) 1194 WP_012027754.1 LCP family protein -
  AAF758_RS08635 (AAF758_08635) - 1754738..1755265 (-) 528 WP_012027755.1 GNAT family N-acetyltransferase -
  AAF758_RS08640 (AAF758_08640) tsaE 1755258..1755698 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40147.52 Da        Isoelectric Point: 10.1278

>NTDB_id=891667 AAF758_RS08610 WP_012027749.1 1750888..1751928(-) (pptB) [Streptococcus suis strain Ss2301]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVLVVIAISLLVLLSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVSGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGIGTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLVVELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=891667 AAF758_RS08610 WP_012027749.1 1750888..1751928(-) (pptB) [Streptococcus suis strain Ss2301]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATATCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTGGTGGTTATTGCAATCAGTCTACTGGTGCTATTGTCCGGAAGAATTGCGACTTATTTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TATCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACAACGGT
TAAAGGAATCGGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTAGTAGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)

Bacterial ABC transporter protein EcsB (EcsB)

(154-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.023

100

0.468
  pptB Streptococcus thermophilus LMD-9

45.455

100

0.462