Detailed information NTG0089163

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OCV27_RS01110
• Genome accession: NZ_AP024889
• Coordinates: 237921..238928 (+)
• Length: 335 a.a.
• NCBI ID: WP_125319323.1
• Uniprot ID: A0A3R9FS96
• Organism: Vibrio pectenicida strain LMG 19642
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 232921..243928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV27_RS01090	metJ	232965..233285 (+)	321	WP_125319319.1	met regulon transcriptional regulator MetJ	-
OCV27_RS01095	-	233456..234733 (-)	1278	WP_125319320.1	malic enzyme-like NAD(P)-binding protein	-
OCV27_RS01100	rpmE	234977..235192 (-)	216	WP_125319321.1	50S ribosomal protein L31	-
OCV27_RS01105	priA	235474..237672 (+)	2199	WP_125319322.1	primosomal protein N'	-
OCV27_RS01110	cytR	237921..238928 (+)	1008	WP_125319323.1	DNA-binding transcriptional regulator CytR	Regulator
OCV27_RS01115	-	239060..239602 (+)	543	WP_125319324.1	SPOR domain-containing protein	-
OCV27_RS01120	hslV	239757..240299 (+)	543	WP_125319325.1	ATP-dependent protease subunit HslV	-
OCV27_RS01125	hslU	240338..241669 (+)	1332	WP_125319326.1	HslU--HslV peptidase ATPase subunit	-
OCV27_RS01130	-	241840..242523 (+)	684	WP_125319327.1	nitroreductase family protein	-
OCV27_RS01135	frdD	242619..242996 (-)	378	WP_125319328.1	fumarate reductase subunit FrdD	-
OCV27_RS01140	frdC	243009..243392 (-)	384	WP_125319329.1	fumarate reductase subunit FrdC	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36998.62 Da
• Isoelectric Point: 6.5988

>NTDB_id=89163 OCV27_RS01110 WP_125319323.1 237921..238928(+) (cytR) [Vibrio pectenicida strain LMG 19642]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAVEHGYIVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEVVNYLTQMGHKRIAQLSGPESAVLCQFRHQGYQQALRRAGITMNPNYCIQGRFTFEDGAKGIRQLLALPEPPTA
IFCHNDAMAIGAIQEAKKLGLRVPTDLSVVGFDDIHFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLRGHDVRAGSRLLE
TQLIIRDSAAPPRNC

Nucleotide

• Length: 1008 bp

>NTDB_id=89163 OCV27_RS01110 WP_125319323.1 237921..238928(+) (cytR) [Vibrio pectenicida strain LMG 19642]
ATGGCGACAATGAAGGATGTTGCTCAGCTGGCTGGCGTTTCAACTGCGACGGTATCGCGGGCGCTTATGAATCCGGAAAA
AGTATCTTCAGCCACAAGGAAGCGAGTCGAGGATGCGGTGTTAGAGGCAGGGTACTCACCTAATTCACTGGCACGTAACC
TACGTAGGAATGAGTCTAAAACTATAATAGCTATCATTCCAGATATCTGCGATCCCTACTACACCGAAATTATTCGTGGG
ATTGAAGATGCAGCTGTGGAGCATGGATACATAGTGTTACTTGGTGATAGTGGGCAACAGAAAAAACGAGAGAGCTCTTT
CGTTAATTTGGTTTTTACCAAACAGGCAGATGGTATGTTGCTGCTTGGAACTGATTTACCATTTGATGTCAGCAAGCCAG
AACAGAAAAATTTACCGCCAATGGTAATGGCATGTGAATTTGCGCCAGAACTTGAGCTACCTACGGTACATATTGATAAC
CTAACTTCAGCATTTGAAGTCGTAAATTATTTGACTCAAATGGGGCACAAGCGCATAGCTCAACTATCTGGACCAGAGTC
CGCAGTTTTGTGCCAGTTTCGTCACCAAGGGTATCAGCAAGCGCTCCGTCGAGCGGGTATTACCATGAATCCCAATTACT
GTATTCAGGGGCGCTTTACATTTGAAGATGGTGCCAAAGGGATTAGGCAGCTATTAGCGTTGCCTGAGCCGCCTACTGCT
ATTTTTTGTCATAACGACGCTATGGCGATTGGAGCCATTCAAGAAGCGAAAAAATTAGGCTTGCGCGTACCTACAGACTT
GTCTGTAGTAGGCTTTGATGATATTCACTTTGCGCAATATTGCGATCCGCCATTAACGACAATTTCACAGCCTCGCTATG
AAATAGGCCGTCAAGCTATGTTGATGATGCTAGATCTATTGAGGGGACATGATGTTAGAGCTGGGTCTCGTTTACTCGAA
ACTCAATTGATTATTCGAGATAGCGCAGCTCCTCCCAGAAATTGTTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: A0A3R9FS96

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	90.06	99.104	0.893
cytR	Vibrio parahaemolyticus RIMD 2210633	86.787	99.403	0.863