Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   AAF758_RS03925 Genome accession   NZ_CP152119
Coordinates   804892..808158 (+) Length   1088 a.a.
NCBI ID   WP_011922284.1    Uniprot ID   -
Organism   Streptococcus suis strain Ss2301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 799892..813158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF758_RS03905 (AAF758_03905) - 800307..800471 (+) 165 WP_012775058.1 hypothetical protein -
  AAF758_RS03910 (AAF758_03910) - 800835..801176 (+) 342 WP_023370610.1 YSIRK-type signal peptide-containing protein -
  AAF758_RS03915 (AAF758_03915) - 802347..804197 (+) 1851 Protein_725 MucBP domain-containing protein -
  AAF758_RS03920 (AAF758_03920) - 804365..804601 (+) 237 WP_014636380.1 LPXTG cell wall anchor domain-containing protein -
  AAF758_RS03925 (AAF758_03925) rexB 804892..808158 (+) 3267 WP_011922284.1 ATP-dependent nuclease subunit B Machinery gene
  AAF758_RS03930 (AAF758_03930) rexA 808158..811808 (+) 3651 WP_012775061.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  AAF758_RS03935 (AAF758_03935) plsY 811930..812574 (-) 645 WP_012775062.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124465.68 Da        Isoelectric Point: 5.0909

>NTDB_id=891629 AAF758_RS03925 WP_011922284.1 804892..808158(+) (rexB) [Streptococcus suis strain Ss2301]
MKLVYTDIRNPLTQYLTEQTATFAEQGKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQP
LDDVGLAMIFFRVLSQFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSK
EGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILIGVYASKKAVQATYAEGNVYQAN
VDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQK
ELDLFESYILFADMKGQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALLEKFMA
FLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVRHLKKK
LESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFRQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNLEQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAMDILAGRFAINPY
TKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=891629 AAF758_RS03925 WP_011922284.1 804892..808158(+) (rexB) [Streptococcus suis strain Ss2301]
ATGAAATTAGTCTATACAGATATTCGCAATCCTCTGACGCAGTATTTGACAGAACAGACAGCAACATTTGCCGAGCAGGG
CAAACGTGTTTTTTATATTGCTCCAAACTCTCTATCCTTTGAGATGGAACGCAAGGTCTTGGAATACCTGCCTGAACAGG
CAACTTTTGATATTATCGTGACCCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAAGCAGGTCAACCG
CTGGATGATGTTGGTCTGGCAATGATTTTCTTTCGTGTTCTATCGCAATTTGAAGATGGCGACTTGAAAGTCTATGGTCG
TTTACAGACAGATTTTGGTTTCATTAACCAGCTAGTTGCTTTATACAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATGGACTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGTAACAGACATTTTGTCCAAA
GAAGGCTTTGAGCATCAGTCTAAGTTAGCACAGTTGACTGGCTTGGTAGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTGCTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAAGCTTTAGTAAGTGCTTTAAATGAACGGGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGCCACCTATGCGGAAGGCAACGTCTATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCAGACTAAGGCAACTTATATTGGTCAAGAGCCGGTCTTGGACAGTAT
CGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGGACCATGATAGACTTGACTCCAGCAGACCAAGAAA
AAATCCAACTCTGGGAGGTTGTTAACCAAAAAGAAGAAGTGGAGCAAGTTGCGACTGCAATTCGTCAGCATGTGCATCAA
GGTGCTCGCTATAAAGACATCTTGTTGCTCTTGGGTGACGTGGATAGCTACAAGTTGCAGATTGGCAAGATTTTTGACAA
GTATGACATTCCTTACTATTTCGGTAAGGCAGAGGAGATGAGTCATCATCCGTTGGTCCATTTTGTGGAGTCCTTGGAGC
GCTTGCGTCGCTATCGTTTTCGTGCGGAAGACCTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GAGCTGGACCTATTTGAGTCTTACATCCTTTTTGCGGATATGAAGGGGCAGGCTGCTTTTTCGAGGGCTTTTTCGGTCAA
TGGCAGAGCAGACTATGATGCTGAAGTCATCAAGGAGAAAAGGCTTGTCTATGATTTGACTGTCTTGGAACCCCTACGTG
CTAAGATTATGGAACCTTTGAACCAGCTGTTTAAGGCTGGACCACAATCTGGAACTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCAATTGATCTTCCTAAAAATATGGAAAAAATGTCTCGAAATTTGAGTGAAGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATCTTCTTGAGAATTTTCATCAGATTTTCGGAAAAGAAAAGTTGAAAATGGATGATT
TTCTGGCTATTTTACAGGCTGGAATGCAGGCCAGCCACTATCGTACCGTTCCTGCAACAGTTGATGTGGTCAATGTCAAA
TCCTATGATTTGATCGAGCCGCACACTGCAAAGTATGTTTATGCTATCGGAATGGGTCAGTCAAATTTTCCAAAAGTTGC
CAAGAATACCAGTCTATTGACAGAAGAAGAGATGGAAAAAGTCAATCTTGTCTCGGCTAGTTCCTCACGTTTCGATTTGG
TCAGCCGAGAGAATATCAAGAAGAACCATGCTGCTATGATGTCTCTGCTTAATTCTGCGACGGAACAGTTAGTCATTTCT
ACTCCTCAGATTTATAACGAAGGCGAAGATAGTCTCTCCCCATATATCAAGATTCTCCAAAAAATGGGGTTGAAATCCGA
AGAACGTGGTCGGATTAAAACACTTAGTCCACAAGACATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCGG
AAAGACCAAGCCTTGAAACAGAGGAGTGGGAAGGGCAGAGGGCCTTCTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAAGCATTGAAATTCCGACCATTACTGGTGATATTGCTTCTAAACAACTTTCAGATGAAACCTTGGCTGC
TTTATATCCAGAGGATAAGCCGCTCAATCTTTCTGCATCCAGCTTGACCAATTTCTACAATAACCAATATCTTTACTTTG
TCCGTAATGTTCTTCGCCTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGTTCTTGCATCGGATT
TTTGAACGAGTGGTCATGGACCAATCTGAGCTAGATTTTGATCAAAAAGTGGACAAGGCAATTCTGCGTACGCGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAGGATGCGGATGCTCGTTATACGGAGGAGGTGCTGGATAAGATTGCTCGTTCCA
GTGCGACTATTTTGCGGGATAATGATTTGGTTGAAATTGATGGCCAGGAAAAGAGTTTCCGTCAGGATAAGGCGCTGGTT
TTTGACCTTCAAAATGGCAAGAGTGTGCATGTAAATGGTACCATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTGGATTACAAGTCCAGCGACCAATCTTTTTCAGTTGGGGATTTTTATAATGGTCTCAAACCTCAGTTGGTGA
CCTACTTGGCAGCCTTACAAGAGCTGGATGAAACCAAGGATAAACCTGTTTTTGGGGCTATGTATTTGCATTTGCAGGAT
CCGATTATCAAATTAAAAGACACGAAGAATTTAGAACAGCTAGAAGGAGCTGCCAATACTAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTGGGGCTCAATCATTTTTATCAGACTCGTAACCAACTCTACACGGAAGATGAGTTTGCGG
TTTTATTGAACCACAACCAAGAACTATACAAACAAGCTGCCATGGACATTCTGGCTGGTCGCTTTGCTATTAACCCTTAT
ACCAAAGATGGGCGTTCGGTGGCAGGTGAGCAGCTGAAGGCAATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGTTGGTCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1041)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.968

100

0.456