Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU30_RS15700 Genome accession   NZ_AP024888
Coordinates   734480..735583 (-) Length   367 a.a.
NCBI ID   WP_077315021.1    Uniprot ID   -
Organism   Vibrio palustris strain CECT 9027     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 729480..740583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS15685 modA 730171..730950 (-) 780 WP_077315023.1 molybdate ABC transporter substrate-binding protein -
  OCU30_RS15690 - 731363..731884 (+) 522 WP_077315119.1 hypothetical protein -
  OCU30_RS15695 luxQ 731904..734468 (-) 2565 WP_077315022.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  OCU30_RS15700 luxP 734480..735583 (-) 1104 WP_077315021.1 substrate-binding domain-containing protein Regulator
  OCU30_RS15705 - 735766..736920 (-) 1155 WP_077315020.1 conjugal transfer protein TraF -
  OCU30_RS15710 - 737045..737341 (-) 297 WP_077315019.1 GIY-YIG nuclease family protein -
  OCU30_RS15715 - 737334..738011 (-) 678 WP_077315018.1 YceH family protein -
  OCU30_RS15720 - 738047..738250 (-) 204 WP_077315017.1 hypothetical protein -
  OCU30_RS15725 - 738441..738764 (+) 324 WP_077315016.1 DUF496 family protein -
  OCU30_RS15730 - 739063..739302 (+) 240 WP_077315015.1 YgjV family protein -
  OCU30_RS15735 trxC 739427..739861 (+) 435 WP_077315014.1 thioredoxin TrxC -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 41972.66 Da        Isoelectric Point: 7.1477

>NTDB_id=89158 OCU30_RS15700 WP_077315021.1 734480..735583(-) (luxP) [Vibrio palustris strain CECT 9027]
MIKTISTFMMCGFITAFSLPTHASQSLKGYWHYQEYLDNHPEQKKLTQQLSDMVHENPVPLAQHQNKPITISVIYPASQV
SDYWVRNIKAFELRMEELGIRYTINQVFTRPNVDARQQSLSLMEALKDKSQYLIFTLNSVRHRKFIEHVLQSSETKIILQ
NITTPVKAWKEHQPFMYVGFDHEIGTQRLVDYFSQAEPKNSRYAMLYYSEGYISAARGGTFIEQMHNRGNAQLVASYYTN
ATEQSGYDATMHILDENDNIQFIYACSTDIALGAMHALEKRGKQHIKLNGWGGGTAELNAILAGKLDATVMRMNDDTGVA
MAEAIKLDLEGKPSPTVYSGQFDLVTKEDSPERIRKLEKQAFRYSDR

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=89158 OCU30_RS15700 WP_077315021.1 734480..735583(-) (luxP) [Vibrio palustris strain CECT 9027]
ATGATCAAAACAATTTCTACCTTTATGATGTGTGGATTTATAACCGCGTTCAGCCTGCCAACCCACGCTTCTCAAAGTCT
GAAAGGGTATTGGCATTATCAAGAGTACCTCGACAACCACCCTGAACAAAAGAAATTGACTCAGCAATTAAGTGATATGG
TGCATGAAAACCCTGTCCCTTTGGCGCAGCACCAAAACAAACCCATCACGATTTCCGTTATTTATCCGGCTAGCCAAGTG
TCTGATTACTGGGTACGTAATATCAAAGCCTTTGAATTACGTATGGAAGAGCTCGGCATTCGTTATACGATAAATCAAGT
TTTTACACGTCCGAATGTGGATGCACGTCAGCAAAGCTTGTCTTTAATGGAAGCACTCAAAGATAAATCGCAATATCTTA
TTTTCACATTAAATTCAGTGCGACATCGTAAATTCATCGAACATGTATTGCAGTCATCTGAAACTAAAATCATTTTACAG
AATATCACGACACCAGTGAAAGCATGGAAAGAGCATCAGCCATTCATGTACGTTGGTTTTGATCACGAGATCGGCACGCA
ACGTCTCGTGGATTACTTTAGTCAAGCAGAGCCTAAAAATAGTCGTTACGCAATGCTGTATTATTCTGAAGGCTATATCA
GTGCAGCGCGCGGTGGGACCTTTATTGAACAAATGCATAACCGTGGTAATGCTCAATTAGTGGCGTCTTACTATACCAAT
GCCACTGAACAAAGTGGCTATGATGCAACAATGCATATTCTCGATGAAAATGACAATATTCAATTCATTTATGCCTGCTC
CACTGATATTGCGCTAGGTGCCATGCACGCGCTAGAAAAGCGAGGCAAACAACATATCAAGCTAAATGGCTGGGGAGGAG
GCACCGCAGAACTCAATGCTATTTTAGCGGGGAAACTTGATGCGACGGTGATGCGCATGAACGATGATACAGGTGTGGCT
ATGGCTGAAGCGATTAAGCTAGATTTAGAAGGCAAACCGTCACCCACGGTCTATTCTGGTCAGTTTGATTTGGTCACGAA
GGAAGACAGCCCCGAACGCATTCGCAAGTTAGAGAAGCAAGCGTTTCGTTATTCAGACCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(72-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.254

96.73

0.602

Multiple sequence alignment