Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RY018_RS08290 Genome accession   NZ_CP136545
Coordinates   1757236..1757862 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain E90850     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752236..1762862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY018_RS08270 (RY018_08245) - 1752635..1754395 (-) 1761 WP_045911584.1 Lon protease family protein -
  RY018_RS08275 (RY018_08250) matP 1754582..1755034 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  RY018_RS08280 (RY018_08255) ompA 1755100..1756152 (-) 1053 WP_108376575.1 porin OmpA -
  RY018_RS08285 (RY018_08260) sulA 1756509..1757018 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  RY018_RS08290 (RY018_08265) sxy/tfoX 1757236..1757862 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  RY018_RS08295 (RY018_08270) yccS 1757819..1759981 (-) 2163 WP_045911585.1 YccS family putative transporter -
  RY018_RS08300 (RY018_08275) - 1760000..1760446 (-) 447 WP_003858149.1 YccF domain-containing protein -
  RY018_RS08305 (RY018_08280) helD 1760569..1762623 (+) 2055 WP_045911586.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=891538 RY018_RS08290 WP_017384804.1 1757236..1757862(+) (sxy/tfoX) [Enterobacter hormaechei strain E90850]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=891538 RY018_RS08290 WP_017384804.1 1757236..1757862(+) (sxy/tfoX) [Enterobacter hormaechei strain E90850]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572