Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU30_RS11335 Genome accession   NZ_AP024887
Coordinates   2419598..2420644 (-) Length   348 a.a.
NCBI ID   WP_261821308.1    Uniprot ID   -
Organism   Vibrio palustris strain CECT 9027     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2386908..2453167 2419598..2420644 within 0


Gene organization within MGE regions


Location: 2386908..2453167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS11160 - 2387277..2387819 (+) 543 WP_077314151.1 PadR family transcriptional regulator -
  OCU30_RS11165 cysE 2387946..2388767 (-) 822 WP_077314152.1 serine O-acetyltransferase -
  OCU30_RS11170 gpsA 2388850..2389887 (-) 1038 WP_077314153.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  OCU30_RS11175 secB 2390003..2390461 (-) 459 WP_077314154.1 protein-export chaperone SecB -
  OCU30_RS11180 - 2390628..2391062 (-) 435 WP_077314155.1 rhodanese-like domain-containing protein -
  OCU30_RS11185 epmA 2391192..2392175 (-) 984 WP_077314156.1 elongation factor P--(R)-beta-lysine ligase -
  OCU30_RS11190 frdA 2392487..2394283 (+) 1797 WP_077314157.1 fumarate reductase (quinol) flavoprotein subunit -
  OCU30_RS11195 - 2394285..2395019 (+) 735 WP_077314158.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  OCU30_RS11200 frdC 2395023..2395406 (+) 384 WP_077314159.1 fumarate reductase subunit FrdC -
  OCU30_RS11205 frdD 2395417..2395782 (+) 366 WP_077314160.1 fumarate reductase subunit FrdD -
  OCU30_RS11210 - 2395926..2397374 (+) 1449 WP_077314161.1 DASS family sodium-coupled anion symporter -
  OCU30_RS11215 efp 2397433..2397999 (-) 567 WP_077314162.1 elongation factor P -
  OCU30_RS11220 epmB 2398033..2399055 (+) 1023 WP_077314163.1 EF-P beta-lysylation protein EpmB -
  OCU30_RS11225 modF 2399224..2400672 (-) 1449 WP_077314164.1 molybdate ABC transporter ATP-binding protein ModF -
  OCU30_RS11230 - 2401122..2401370 (-) 249 WP_077314165.1 DUF4282 domain-containing protein -
  OCU30_RS11235 - 2401768..2402262 (+) 495 Protein_2132 IS3 family transposase -
  OCU30_RS11240 - 2402259..2402483 (-) 225 WP_235861848.1 hypothetical protein -
  OCU30_RS11245 - 2402506..2403414 (-) 909 WP_077314166.1 copper resistance D family protein -
  OCU30_RS11250 - 2403462..2403833 (-) 372 WP_077314167.1 copper resistance CopC family protein -
  OCU30_RS11255 - 2403856..2404719 (-) 864 WP_077314168.1 copper resistance protein B -
  OCU30_RS11260 - 2404716..2406548 (-) 1833 WP_077314169.1 copper resistance system multicopper oxidase -
  OCU30_RS11265 - 2407001..2408157 (+) 1157 WP_261821307.1 IS3 family transposase -
  OCU30_RS11270 groL 2408376..2410022 (-) 1647 WP_077315127.1 chaperonin GroEL -
  OCU30_RS11275 - 2410074..2410364 (-) 291 WP_077315128.1 co-chaperone GroES -
  OCU30_RS11280 - 2410667..2411287 (+) 621 WP_077315129.1 helix-turn-helix transcriptional regulator -
  OCU30_RS11285 - 2411402..2411737 (+) 336 WP_077315130.1 DUF3135 domain-containing protein -
  OCU30_RS11290 - 2411815..2412285 (-) 471 WP_077315131.1 DUF805 domain-containing protein -
  OCU30_RS11295 - 2412296..2412649 (-) 354 WP_077315132.1 5-carboxymethyl-2-hydroxymuconate Delta-isomerase -
  OCU30_RS11300 tpiA 2412869..2413642 (+) 774 WP_077315133.1 triose-phosphate isomerase -
  OCU30_RS11305 - 2413789..2415147 (+) 1359 WP_077315134.1 MATE family efflux transporter -
  OCU30_RS11310 rraA 2415211..2415750 (-) 540 WP_077315135.1 ribonuclease E activity regulator RraA -
  OCU30_RS11315 - 2415824..2416741 (-) 918 WP_077315136.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU30_RS11320 hslU 2416847..2418181 (-) 1335 WP_077315137.1 HslU--HslV peptidase ATPase subunit -
  OCU30_RS11325 hslV 2418226..2418789 (-) 564 WP_077315138.1 ATP-dependent protease subunit HslV -
  OCU30_RS11330 - 2418910..2419467 (-) 558 WP_077315139.1 SPOR domain-containing protein -
  OCU30_RS11335 cytR 2419598..2420644 (-) 1047 WP_261821308.1 DNA-binding transcriptional regulator CytR Regulator
  OCU30_RS11340 priA 2420911..2423115 (-) 2205 WP_077315141.1 primosomal protein N' -
  OCU30_RS11345 rpmE 2423419..2423634 (+) 216 WP_077315142.1 50S ribosomal protein L31 -
  OCU30_RS11350 - 2423920..2425188 (+) 1269 WP_077315143.1 malic enzyme-like NAD(P)-binding protein -
  OCU30_RS11355 metJ 2425287..2425604 (-) 318 WP_077315144.1 met regulon transcriptional regulator MetJ -
  OCU30_RS11360 - 2425804..2426970 (+) 1167 WP_077315145.1 O-succinylhomoserine (thiol)-lyase -
  OCU30_RS11365 - 2426971..2429382 (+) 2412 WP_077315146.1 bifunctional aspartate kinase/homoserine dehydrogenase II -
  OCU30_RS11370 zapB 2429478..2429720 (-) 243 WP_077315147.1 cell division protein ZapB -
  OCU30_RS11375 glpX 2430037..2431044 (+) 1008 WP_077315148.1 class II fructose-bisphosphatase -
  OCU30_RS11380 pfkA 2431099..2432061 (-) 963 WP_077315149.1 6-phosphofructokinase -
  OCU30_RS11385 fieF 2432268..2433203 (-) 936 WP_077315150.1 CDF family cation-efflux transporter FieF -
  OCU30_RS11390 - 2433382..2434071 (+) 690 WP_077315151.1 response regulator -
  OCU30_RS11395 cpxA 2434071..2435456 (+) 1386 WP_077315152.1 envelope stress sensor histidine kinase CpxA -
  OCU30_RS11400 - 2435534..2436139 (+) 606 WP_077315153.1 superoxide dismutase -
  OCU30_RS11405 trmL 2436248..2436724 (+) 477 WP_077315154.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  OCU30_RS11410 - 2436758..2437246 (-) 489 WP_077315155.1 FxsA family protein -
  OCU30_RS11415 - 2437447..2439348 (+) 1902 WP_077315156.1 diguanylate cyclase -
  OCU30_RS11420 aspA 2439537..2440988 (+) 1452 WP_077315157.1 aspartate ammonia-lyase -
  OCU30_RS11425 - 2441180..2442952 (+) 1773 WP_077315158.1 protein-disulfide reductase DsbD -
  OCU30_RS11430 - 2443096..2443725 (+) 630 WP_077315159.1 response regulator transcription factor -
  OCU30_RS11435 - 2443744..2444415 (-) 672 WP_077315160.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  OCU30_RS11440 gmk 2444795..2445418 (+) 624 WP_077315200.1 guanylate kinase -
  OCU30_RS11445 rpoZ 2445536..2445808 (+) 273 WP_077315162.1 DNA-directed RNA polymerase subunit omega -
  OCU30_RS11450 spoT 2445846..2447972 (+) 2127 WP_077315163.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  OCU30_RS11455 trmH 2448031..2448717 (+) 687 WP_077315164.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  OCU30_RS11460 recG 2448848..2450926 (+) 2079 WP_077315165.1 ATP-dependent DNA helicase RecG -
  OCU30_RS11465 - 2451017..2451583 (+) 567 WP_077315166.1 hypothetical protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38463.27 Da        Isoelectric Point: 6.7557

>NTDB_id=89152 OCU30_RS11335 WP_261821308.1 2419598..2420644(-) (cytR) [Vibrio palustris strain CECT 9027]
MHYPDFKKRVFCMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVTIVPD
ICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKREHSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFA
PELELPTVHIDNLTSAFEAVNYLTQMGHKRIAEIAGPKSAALCSFRHQGYQQALRRAGLTMNEDYCMSGDFSFEAGAHIV
TQLLALPQAPTAIFCHNDTMAIGAIQKAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDVLR
GHDVQAGSRLLDASLVVRESTAPPRSVQ

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=89152 OCU30_RS11335 WP_261821308.1 2419598..2420644(-) (cytR) [Vibrio palustris strain CECT 9027]
ATTCACTATCCAGATTTTAAGAAGAGGGTTTTTTGTATGGCGACAATGAAGGATGTTGCCCAGCTTGCCGGCGTATCAAC
TGCCACCGTTTCTCGTGCGTTGATGAACCCGGAAAAAGTGTCTTCTTCGACGCGTAAACGTGTGGAAGAAGCGGTTTTAG
AAGCGGGTTATTCTCCAAATTCTTTAGCGAGAAACTTACGCCGAAATGAATCAAAAACGATCGTGACGATCGTACCTGAC
ATTTGCGATCCATACTTCTCTGAAATTATTCGTGGTATTGAAGATGCCGCGATGGAGCATGGTTACCTTGTGTTACTTGG
CGACAGTGGTCAGCAAAAGAAACGAGAGCATTCATTCGTCAATTTAGTCTTTACCAAACAAGCGGACGGCATGTTACTGC
TTGGTACTGATCTGCCGTTTGATGTGAGTAAACCTGAGCAGAAAAATTTACCGCCGATGGTCATGGCGTGTGAGTTTGCC
CCCGAACTTGAATTGCCAACCGTTCATATTGATAACTTAACGTCTGCGTTTGAGGCTGTGAACTATTTGACTCAGATGGG
ACATAAGCGCATTGCTGAAATTGCAGGGCCCAAAAGTGCGGCGCTATGCTCGTTCCGTCATCAAGGTTACCAGCAGGCAT
TACGCCGCGCAGGATTAACCATGAATGAAGATTATTGTATGTCAGGTGATTTTTCGTTTGAAGCTGGCGCGCACATTGTG
ACGCAATTATTGGCGCTGCCCCAAGCCCCCACGGCTATTTTTTGTCATAACGACACCATGGCGATTGGCGCAATTCAAAA
AGCGAAACGCCTTGGCTTGCGCGTACCACAAGATTTATCGGTGGTTGGCTTTGACGATATTCAGTTCGCACAATATTGCG
ATCCACCATTAACGACAATTTCTCAGCCGCGCTATGAAATTGGGCGCCAAGCCATGCTGATGATGCTAGATGTATTACGT
GGCCACGATGTTCAAGCAGGTTCACGTTTACTGGACGCTTCTTTAGTCGTGCGAGAAAGCACGGCACCGCCGCGTTCAGT
ACAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(15-60)

Periplasmic binding protein-like domain (Peripla_BP_3)

(180-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

91.566

95.402

0.874
  cytR Vibrio parahaemolyticus RIMD 2210633

85.799

97.126

0.833

Multiple sequence alignment