Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   KNP07_RS09690 Genome accession   NZ_CP152075
Coordinates   2049587..2049916 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NCTR 501     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2044587..2054916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNP07_RS09675 (KNP07_09675) - 2045232..2046182 (+) 951 WP_020750837.1 NAD-dependent epimerase/dehydratase family protein -
  KNP07_RS09680 (KNP07_09680) - 2046225..2047244 (+) 1020 WP_217385724.1 glycosyltransferase family 4 protein -
  KNP07_RS09685 (KNP07_09685) - 2047399..2049396 (+) 1998 WP_171892991.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  KNP07_RS09690 (KNP07_09690) comEA/comE1 2049587..2049916 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  KNP07_RS09700 (KNP07_09700) - 2050133..2051329 (-) 1197 WP_134279200.1 amino acid aminotransferase -
  KNP07_RS09705 (KNP07_09705) uvrB 2051517..2053529 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=891510 KNP07_RS09690 WP_003091430.1 2049587..2049916(+) (comEA/comE1) [Pseudomonas aeruginosa strain NCTR 501]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=891510 KNP07_RS09690 WP_003091430.1 2049587..2049916(+) (comEA/comE1) [Pseudomonas aeruginosa strain NCTR 501]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385