Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   AAFX34_RS19025 Genome accession   NZ_CP151937
Coordinates   2503904..2507308 (-) Length   1134 a.a.
NCBI ID   WP_061058330.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2498904..2512308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS19005 (AAFX34_19565) - 2499850..2500278 (+) 429 WP_011078263.1 HIT family protein -
  AAFX34_RS19010 (AAFX34_19570) - 2500387..2500617 (-) 231 WP_011078264.1 FeoC-like transcriptional regulator -
  AAFX34_RS19015 (AAFX34_19575) feoB 2500614..2502890 (-) 2277 WP_061058331.1 Fe(2+) transporter permease subunit FeoB -
  AAFX34_RS19020 (AAFX34_19580) - 2502890..2503117 (-) 228 WP_011149798.1 ferrous iron transport protein A -
  AAFX34_RS19025 (AAFX34_19585) tfoS 2503904..2507308 (-) 3405 WP_061058330.1 AraC family transcriptional regulator Regulator
  AAFX34_RS19030 (AAFX34_19590) znuA 2507480..2508355 (-) 876 WP_039553089.1 zinc ABC transporter substrate-binding protein ZnuA -
  AAFX34_RS19035 (AAFX34_19595) znuC 2508437..2509222 (+) 786 WP_011078269.1 zinc ABC transporter ATP-binding protein ZnuC -
  AAFX34_RS19040 (AAFX34_19600) znuB 2509215..2510000 (+) 786 WP_039553087.1 zinc ABC transporter permease subunit ZnuB -
  AAFX34_RS19045 (AAFX34_19605) sucD 2510083..2510955 (-) 873 WP_011149794.1 succinate--CoA ligase subunit alpha -
  AAFX34_RS19050 (AAFX34_19610) sucC 2510955..2512121 (-) 1167 WP_011078272.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1134 a.a.        Molecular weight: 126573.11 Da        Isoelectric Point: 5.3321

>NTDB_id=891388 AAFX34_RS19025 WP_061058330.1 2503904..2507308(-) (tfoS) [Vibrio vulnificus strain TBV029]
MLRILAWLLLAGLTLPFKVLALDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLE
YPSEQVAFHQGSFWTFVANEVFQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQ
NNQSSYVYINDAKRVLSKWVLGTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIM
IGESHVLSMTETNQEYWIGTEHGLYSYSFLTGQVAKVKAAGAQDVSPDNRKIYALVNDEQGGIWVATNSGILYYSLFGRK
FERLNNITEEKASRFNGNITKIVYASDETIWFKDANNLYRAIGVNKQYSRVRLPIKVNDFALEDGNIWIASEQGLYIYDT
NQYKLRSFDLPSYLKGKEIDFVSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRT
DHGAYVLENDKIRFERNTQSFGESVDIAEAKDGSLWFAGTHGIYRKDPTEKTLGELALPQENVKPICLVTDASGIWMVSS
IGLSFYNFDGELRKHFGSRSGIMSNEFVEGACAASFGEAQSGSVLVLGSKYGLVFADRDDLMVSKLPEPRVVISQVRIDD
QVANIGQKEWQLPELAYGSAISFGLGVMPNAYGETLYYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVR
FTVLHPWYQTTMAMAIFVLLIVALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
NVARSLRQSVDALLSKPSVEPASEYQEHQMRIAMLLEELKSSPSDGTDGYLQNFNVSHIIQSVVDVWEDELNKSGVQVHI
SGESDDYRVAVGQFNLDVIFNSVFASVLKRAYRGQMLDIVIREQNDFVEVSFIDFGQPFSTSTEAEDSAGVESTKVDTAI
EKLPALVEQSGGRLSLFSSAERNKIEILWPKAVESLINDEEPSVFVDSVDPSPVTEVSSEGAPSPEQLWLAKVEAMVAEH
YTNPEFGTAMAAKKLYVSERSLQRRFKSASSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFG
VPPSKFASDALESE

Nucleotide


Download         Length: 3405 bp        

>NTDB_id=891388 AAFX34_RS19025 WP_061058330.1 2503904..2507308(-) (tfoS) [Vibrio vulnificus strain TBV029]
TTGCTGCGTATTCTTGCCTGGCTTCTACTTGCTGGGCTTACACTACCGTTCAAAGTGCTAGCTTTGGACGGTAACTCTGC
CATATTTTACCCACTGCCTGGACAGGAGCAGGGAACCTTTGTTGCCGCTAAAAATCTCTTTGTTGGTGGTGATGGTGGTT
TGTGGATCCACGACGTGCACGGCAAAGTGCAATATTTCGATGGCAATACCTTGTTGCCGAAACGTGGCAGCCTTCTAGAG
TATCCTTCCGAGCAAGTGGCCTTTCATCAAGGCAGTTTTTGGACTTTTGTCGCGAATGAAGTCTTCCAAACATACCCCAA
TCAGAAGCGTCAGTTAGCGTTCAGCTTAAATCCGGGGGCAGAAATCAGAAAAATTGGCAGCTCAGATGGCCACATTTGGG
TGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACCTATTCCTTACTCTCGTTGTATCAA
AACAATCAGAGTAGCTACGTCTACATCAATGATGCAAAGCGGGTTTTAAGCAAATGGGTACTCGGTACCACATCGGGAGC
TTACCTATCACAAGGTGAGCAATTTACCCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAAACTGTACTTTTCTCCGA
CTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGCGCTGCGCTCATTGATATTTTAAAGCCGACTCAAAAAAACATCATG
ATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACGGAACATGGTCTGTACAGTTA
CTCGTTTTTAACTGGACAAGTGGCCAAAGTGAAAGCGGCAGGTGCGCAAGATGTCTCTCCTGATAATCGAAAAATTTACG
CGTTGGTGAATGATGAACAAGGGGGTATTTGGGTTGCGACGAACAGTGGCATTCTCTACTACTCTCTGTTTGGCCGAAAA
TTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAATATCACCAAAATTGTCTATGCATCAGA
TGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGAGCCATTGGGGTTAATAAACAGTACAGCCGCGTGCGTTTGC
CGATAAAGGTGAATGACTTTGCACTTGAAGATGGCAACATCTGGATTGCTTCCGAGCAAGGTCTGTATATATACGACACG
AATCAGTACAAACTTCGATCGTTCGATTTACCAAGTTACCTTAAAGGTAAAGAGATTGATTTTGTTTCGGTCAGCCCTCA
AGGCAAGGTTTGGATAAGTTCGGGTTATCGATTAGCTGCCATTGGCGTTGCCGATGGGCGCTTCCAAGATTATGGCGATC
GGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTGGATCAAAAAGTCCCGTTAATCGTAAGAACC
GATCACGGAGCCTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTTGGTGAAAGTGTCGATAT
TGCAGAAGCGAAAGATGGGTCGCTATGGTTTGCAGGGACTCACGGCATCTATCGTAAAGATCCCACAGAAAAAACGTTAG
GAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCTTAGTCACCGATGCTAGCGGCATTTGGATGGTGAGTTCA
ATTGGTCTCAGTTTTTACAATTTTGACGGAGAGCTGCGTAAGCACTTTGGGTCTCGCTCGGGCATTATGAGTAATGAGTT
CGTTGAAGGGGCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTTGGTTCAAAATATGGCCTGG
TATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCCAAGTTCGTATTGATGAT
CAGGTTGCAAATATCGGGCAAAAAGAGTGGCAATTGCCCGAGTTAGCGTATGGTTCCGCGATTAGTTTTGGCCTCGGCGT
GATGCCCAATGCTTACGGTGAAACGCTTTATTACCGTTTAAACCAGGAACACTGGCAAACCACAGAAGCAGGACAAGTCT
CTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGCCTAGTCGCAGGGGATTCCGTGCAAGTTCGC
TTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCAATTTTTGTCTTGCTTATCGTAGCGCTGGGCGGCTT
AGTTGTTTTCTGGCGTTCTCGTTACGTCAGTGTTCAAAATCGGGAGTTAACGGCACTGGTGGCATTGAAGACCAATCAAT
TGCGTCATCAGAGTCGAGTGTTGCTCACCAGTAACCAACAACTTCGTAAACAGATCCAAGTTAGAAATTTGCTGGTTGAC
AATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTAAGCAAGCCATCGGTTGAACCTGCCTCAGAATATCAGGA
ACATCAAATGCGCATAGCAATGCTTTTGGAAGAGCTAAAAAGCTCGCCCAGCGATGGAACTGACGGGTATCTGCAAAACT
TTAACGTTAGCCATATCATTCAGTCGGTCGTTGACGTTTGGGAAGATGAACTCAATAAAAGCGGTGTTCAGGTGCACATT
TCTGGCGAATCGGACGACTATCGTGTCGCGGTAGGGCAATTTAATCTGGATGTCATTTTTAATAGTGTTTTTGCAAGTGT
GTTGAAACGCGCCTATCGTGGCCAAATGCTCGATATTGTGATCAGAGAGCAAAACGATTTTGTTGAAGTGTCGTTTATTG
ATTTTGGCCAGCCGTTTAGTACGAGCACGGAAGCCGAGGATAGCGCTGGTGTTGAGTCGACAAAAGTCGATACTGCAATC
GAGAAGCTTCCTGCTTTAGTTGAACAAAGCGGTGGACGCTTAAGCTTGTTCAGTAGCGCTGAGCGAAACAAGATCGAAAT
ACTGTGGCCAAAAGCGGTTGAGTCTCTGATAAATGATGAAGAGCCAAGCGTTTTTGTTGATTCAGTCGATCCCTCTCCAG
TTACGGAAGTCTCATCCGAAGGCGCTCCATCGCCAGAGCAGTTGTGGCTGGCGAAGGTTGAGGCTATGGTGGCAGAGCAT
TATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAAAAGCTCTATGTTTCTGAGCGCAGCCTACAGAGACGGTTTAA
ATCAGCAAGCTCTCGTACATTTACGGATTACCTCACAGAGGTTCGTTTAGAAAAAGCATGCGAAAGTTTGTTGGCTGGTG
AAAAAGTGGTCGATGTGGCTTTCGCATCGGGATTTAACGATCCTTCTTACTTTAGTCAACGTTTTAAACTGTACTTTGGT
GTGCCCCCTTCAAAATTTGCCAGTGACGCTCTAGAGTCCGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1052-1126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.703

100

0.401