Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU30_RS02360 Genome accession   NZ_AP024887
Coordinates   477576..478094 (+) Length   172 a.a.
NCBI ID   WP_077311084.1    Uniprot ID   A0A1R4AZK9
Organism   Vibrio palustris strain CECT 9027     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 472576..483094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS02350 gshA 475379..476941 (+) 1563 WP_077311077.1 glutamate--cysteine ligase -
  OCU30_RS02355 - 476970..477548 (+) 579 WP_420856675.1 hypothetical protein -
  OCU30_RS02360 luxS 477576..478094 (+) 519 WP_077311084.1 S-ribosylhomocysteine lyase Regulator
  OCU30_RS02365 - 478211..479488 (-) 1278 WP_077311087.1 HlyC/CorC family transporter -
  OCU30_RS02370 - 479574..480368 (-) 795 WP_077311090.1 cytochrome C assembly family protein -
  OCU30_RS02375 ffh 480583..481965 (+) 1383 WP_077311092.1 signal recognition particle protein -
  OCU30_RS02380 rpsP 482186..482434 (+) 249 WP_077311095.1 30S ribosomal protein S16 -
  OCU30_RS02385 rimM 482460..483014 (+) 555 WP_077311098.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18947.61 Da        Isoelectric Point: 4.5641

>NTDB_id=89137 OCU30_RS02360 WP_077311084.1 477576..478094(+) (luxS) [Vibrio palustris strain CECT 9027]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDDITVFDLRFTVPNEALLSEKGIHTLEHLFAGFMRAHLNGDDVEIIDISP
MGCRTGFYMSLIGTPGEQRVANAWLAAMNDVLKVADQNQIPELNEYQCGTATMHSLDEAKQIAQAVISSGIQVNKNDDLA
LPDAMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89137 OCU30_RS02360 WP_077311084.1 477576..478094(+) (luxS) [Vibrio palustris strain CECT 9027]
ATGCCGTTATTAGACAGCTTTACCGTCGATCACACGCGTATGCATGCACCTGCAGTTCGTGTCGCAAAGAACATGCAAAC
ACCAAAGGGTGACGACATCACGGTCTTTGATTTACGCTTTACCGTACCAAACGAAGCTCTCCTTTCTGAAAAAGGGATTC
ACACATTAGAGCATTTATTTGCAGGCTTTATGCGTGCGCATCTTAATGGTGACGATGTGGAAATTATCGATATCTCTCCG
ATGGGCTGTCGTACTGGTTTTTACATGAGTTTAATTGGCACGCCGGGTGAACAGCGTGTTGCTAACGCTTGGTTGGCGGC
AATGAACGATGTACTAAAAGTTGCGGATCAAAACCAAATCCCTGAATTGAATGAATACCAATGTGGTACCGCCACTATGC
ACTCGCTTGATGAAGCGAAGCAAATTGCTCAAGCTGTGATTAGCAGTGGCATTCAAGTGAACAAAAATGATGATCTTGCA
TTGCCTGATGCAATGCTGCAAGAGTTGAAAGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4AZK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

80.702

99.419

0.802

Multiple sequence alignment