Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RZS16_RS08120 Genome accession   NZ_CP136524
Coordinates   1660420..1660866 (-) Length   148 a.a.
NCBI ID   WP_001791635.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BAA-1556_Catania_SCV     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1655420..1665866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZS16_RS08090 (RZS16_08085) gcvPA 1656346..1657692 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RZS16_RS08095 (RZS16_08090) gcvT 1657712..1658803 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  RZS16_RS08100 (RZS16_08095) - 1658962..1659486 (-) 525 Protein_1591 shikimate kinase -
  RZS16_RS08105 (RZS16_08100) - 1659476..1659622 (-) 147 WP_001789879.1 hypothetical protein -
  RZS16_RS08110 (RZS16_08105) comGF 1659719..1660216 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  RZS16_RS08115 (RZS16_08110) comGE 1660134..1660433 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  RZS16_RS08120 (RZS16_08115) comGD 1660420..1660866 (-) 447 WP_001791635.1 competence type IV pilus minor pilin ComGD Machinery gene
  RZS16_RS08125 (RZS16_08120) comGC 1660844..1661155 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RZS16_RS08130 (RZS16_08125) comGB 1661169..1662239 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  RZS16_RS08135 (RZS16_08130) comGA 1662211..1663185 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  RZS16_RS08140 (RZS16_08135) - 1663237..1663860 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RZS16_RS08145 (RZS16_08140) - 1663857..1664186 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RZS16_RS08150 (RZS16_08145) - 1664186..1665172 (-) 987 WP_000161314.1 ROK family glucokinase -
  RZS16_RS08155 (RZS16_08150) - 1665169..1665372 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17199.34 Da        Isoelectric Point: 10.2908

>NTDB_id=891366 RZS16_RS08120 WP_001791635.1 1660420..1660866(-) (comGD) [Staphylococcus aureus strain BAA-1556_Catania_SCV]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNNIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=891366 RZS16_RS08120 WP_001791635.1 1660420..1660866(-) (comGD) [Staphylococcus aureus strain BAA-1556_Catania_SCV]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAATATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986