Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AAFX34_RS12745 Genome accession   NZ_CP151937
Coordinates   1122564..1123166 (+) Length   200 a.a.
NCBI ID   WP_061058804.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1117564..1128166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS12725 (AAFX34_12710) - 1118837..1119229 (+) 393 WP_072603452.1 YbaN family protein -
  AAFX34_RS12730 (AAFX34_12715) apt 1119395..1119940 (+) 546 WP_011079898.1 adenine phosphoribosyltransferase -
  AAFX34_RS12735 (AAFX34_12720) dnaX 1119949..1122141 (+) 2193 WP_263180513.1 DNA polymerase III subunit gamma/tau -
  AAFX34_RS12740 (AAFX34_12725) - 1122219..1122548 (+) 330 WP_011150874.1 YbaB/EbfC family nucleoid-associated protein -
  AAFX34_RS12745 (AAFX34_12730) recR 1122564..1123166 (+) 603 WP_061058804.1 recombination mediator RecR Machinery gene
  AAFX34_RS12750 (AAFX34_12735) - 1123228..1124373 (-) 1146 WP_263180512.1 PKD domain-containing protein -
  AAFX34_RS12755 (AAFX34_12740) - 1124389..1125423 (-) 1035 WP_080726380.1 DUF2860 family protein -
  AAFX34_RS12760 (AAFX34_12745) - 1125490..1127097 (-) 1608 WP_332221996.1 ATP-binding protein -
  AAFX34_RS12765 (AAFX34_12750) - 1127094..1127813 (-) 720 WP_332221999.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21861.97 Da        Isoelectric Point: 6.1578

>NTDB_id=891359 AAFX34_RS12745 WP_061058804.1 1122564..1123166(+) (recR) [Vibrio vulnificus strain TBV029]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSHAMTEIGHCNECRTFTEEDVCHICNNPKRQEN
GLLCVVESPADIAAVEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDIKEVILATNPTVEGEATAHYIAEL
CREQKVDASRIAHGVPVGGELELVDGTTLSHSLLGRHKLN

Nucleotide


Download         Length: 603 bp        

>NTDB_id=891359 AAFX34_RS12745 WP_061058804.1 1122564..1123166(+) (recR) [Vibrio vulnificus strain TBV029]
ATGCGTACCAGCCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTTTGCCTGGGGTTGGCCCCAAGTCAGCACAGCG
TATGGCCTTTCATTTGTTACAGCGAGATAGAAAAGGCGGCCTGCAGCTTGCGGATGCATTAAGTCATGCCATGACGGAAA
TTGGTCACTGTAACGAGTGCCGTACTTTTACCGAAGAAGACGTGTGTCATATCTGCAACAACCCAAAACGCCAAGAAAAC
GGATTATTGTGTGTGGTCGAAAGCCCTGCCGATATCGCTGCGGTGGAAGCCACAGGACAATTCTCTGGTCGTTACTTTGT
GCTGATGGGGCACCTATCACCGCTTGATGGTATTGGACCTAGTGATATTGGCCTCGATGTCCTCGATTATCGTCTGCGTC
GCGGTGATATCAAAGAAGTGATCTTAGCGACCAACCCTACCGTGGAAGGTGAAGCGACTGCGCACTACATCGCTGAACTT
TGTCGAGAGCAAAAAGTGGACGCCAGTCGAATTGCTCATGGTGTTCCGGTCGGTGGGGAGCTTGAGCTGGTGGATGGCAC
GACACTCTCCCATTCGTTATTGGGCAGACACAAACTCAACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.5

0.435
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.5

100

0.435