Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AAFX34_RS09535 Genome accession   NZ_CP151937
Coordinates   412698..414902 (-) Length   734 a.a.
NCBI ID   WP_061058956.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407698..419902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS09515 (AAFX34_09505) hslU 408731..410062 (-) 1332 WP_011079331.1 HslU--HslV peptidase ATPase subunit -
  AAFX34_RS09520 (AAFX34_09510) hslV 410090..410644 (-) 555 WP_011079332.1 ATP-dependent protease subunit HslV -
  AAFX34_RS09525 (AAFX34_09515) - 410795..411352 (-) 558 WP_011151294.1 SPOR domain-containing protein -
  AAFX34_RS09530 (AAFX34_09520) cytR 411462..412469 (-) 1008 WP_011079334.1 DNA-binding transcriptional regulator CytR Regulator
  AAFX34_RS09535 (AAFX34_09525) priA 412698..414902 (-) 2205 WP_061058956.1 primosomal protein N' Machinery gene
  AAFX34_RS09540 (AAFX34_09530) rpmE 415183..415404 (+) 222 WP_011151292.1 50S ribosomal protein L31 -
  AAFX34_RS09545 (AAFX34_09535) - 415682..416959 (+) 1278 WP_011079337.1 malic enzyme-like NAD(P)-binding protein -
  AAFX34_RS09550 (AAFX34_09540) metJ 417046..417363 (-) 318 WP_011079338.1 met regulon transcriptional regulator MetJ -
  AAFX34_RS09555 (AAFX34_09545) - 417575..418741 (+) 1167 WP_045620690.1 O-succinylhomoserine (thiol)-lyase -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 81990.56 Da        Isoelectric Point: 8.5763

>NTDB_id=891332 AAFX34_RS09535 WP_061058956.1 412698..414902(-) (priA) [Vibrio vulnificus strain TBV029]
MRPSIARVALPVPLDKQFDYLVPGHLFPIIGGRVSVPFGRQTLIGIVTALVQESDFPREQLKPIKAVLDHRPIWPDSVYS
LLLWCSQFYQYPLGETLHNALPAALRKGKAADFATLQEWQLTELGKNQLMQGLNSRAIKQAKVLNMLANGPLPHQTFLDE
EVASTTLRTLEEKGWISCEEKTPQLARWGNPIEHPVDKPKLNQEQAIAISTVNSQTDFGCYLLEGVTGSGKTEVYLNLIK
PILEQGKQALVLVPEIGLTPQTINRFRQRFDVPVAVIHSGLNDTERLNAWLSARDKAAGIVIGTRSALLIPFAQLGIIIV
DEEHDASYKQQDSLRYHARDVAVMRAAKEGIPIVLGSATPALETLHNALTGKYHHLSLTQRAGVAVPTTNKVLDVKGLYL
ESGLSAPLIAEMRRHLKAGNQVMLFLNRRGFSPALMCHECGWIAECKRCDAYYTYHQYSNEIRCHHCGSQQPIIHQCQGC
GSTQLVTVGVGTEQLENQLTALFPDYKAIRIDRDSTRRKGSLESALEAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDV
DGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVILQTHHPEHTLLKALLTKDYRHFAQSALEERKIAQLPPFSFLTLF
RAEANHSEIVETFLRQVRMTLESHPLFDHTCLVLGPTPAPLAKRAGKYRWQLLLQTQHRSLMQKILSSTKPAIDLLPDAK
KVRWNLDIEPQDLS

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=891332 AAFX34_RS09535 WP_061058956.1 412698..414902(-) (priA) [Vibrio vulnificus strain TBV029]
ATGCGTCCATCCATTGCTCGTGTTGCGCTGCCAGTGCCACTCGATAAACAATTTGATTATCTCGTTCCTGGACACCTTTT
TCCGATCATTGGTGGTCGCGTGAGTGTGCCATTTGGACGACAAACCTTGATTGGCATTGTCACCGCTTTGGTTCAAGAAT
CAGACTTTCCACGCGAGCAACTTAAACCCATTAAAGCGGTGTTGGATCATCGTCCTATTTGGCCCGATTCCGTCTACAGT
TTATTACTTTGGTGTAGCCAGTTTTACCAATATCCCTTAGGTGAAACACTGCATAACGCCCTCCCTGCAGCACTAAGAAA
AGGCAAAGCGGCTGACTTTGCCACTCTACAAGAATGGCAACTGACCGAGTTAGGCAAAAACCAGTTGATGCAAGGGTTAA
ACAGTCGTGCGATAAAGCAGGCTAAAGTATTGAATATGCTTGCTAATGGCCCTCTGCCTCACCAAACCTTTTTGGATGAG
GAAGTGGCATCCACAACCTTACGCACCTTGGAAGAAAAAGGCTGGATCAGCTGTGAAGAAAAAACGCCACAGTTGGCTCG
TTGGGGGAATCCGATTGAACATCCCGTCGATAAGCCGAAACTCAACCAAGAGCAAGCCATTGCCATTTCGACCGTTAACA
GCCAGACAGACTTTGGCTGTTATCTGTTGGAAGGGGTCACAGGTTCAGGCAAAACCGAAGTTTATCTCAACTTGATCAAA
CCCATTTTGGAACAAGGCAAACAGGCTCTGGTATTGGTCCCTGAAATTGGTTTAACACCACAAACCATCAATCGTTTTCG
TCAACGATTTGATGTGCCAGTCGCCGTCATCCATTCTGGTCTTAATGATACGGAACGTCTCAACGCTTGGCTTTCCGCAC
GAGACAAAGCGGCGGGCATTGTCATTGGTACACGCTCTGCACTACTGATCCCATTTGCTCAGTTGGGGATCATCATTGTC
GATGAAGAGCACGACGCTTCGTACAAACAGCAAGATAGCTTGCGTTACCATGCTCGCGATGTGGCTGTGATGCGAGCGGC
AAAAGAAGGCATTCCAATTGTTCTCGGTTCAGCCACGCCCGCGTTAGAAACCTTACACAACGCACTTACGGGCAAATATC
ATCATCTCTCGCTAACCCAACGAGCAGGAGTGGCCGTGCCAACCACCAACAAAGTGCTGGATGTCAAAGGGCTCTATCTG
GAAAGCGGCCTCTCAGCGCCACTCATTGCTGAAATGCGTCGTCATTTAAAAGCGGGCAATCAGGTGATGCTGTTTCTCAA
CCGTCGAGGCTTCTCCCCTGCGTTAATGTGTCATGAATGTGGTTGGATTGCCGAATGCAAACGCTGCGATGCCTATTACA
CTTATCACCAGTACAGCAATGAAATCCGCTGTCACCACTGTGGTTCTCAACAACCTATTATCCATCAATGCCAAGGTTGT
GGTTCGACACAACTGGTGACGGTTGGTGTCGGCACTGAGCAACTGGAAAACCAGTTGACGGCCCTGTTTCCAGACTACAA
AGCGATTCGCATCGACCGCGATAGCACACGACGCAAAGGCAGCCTCGAAAGCGCTTTAGAAGCCATTCGCAAAGGGGAAT
ACCAAATTTTAATTGGCACGCAAATGCTAGCTAAAGGGCATCATTTCCCAGACGTGACGTTAGTGGCACTATTGGATGTT
GATGGGTCACTGTACAGCAGTGATTTCCGAGCGTCCGAACGATTGGCTCAGTTGTTTATTCAAGTAGCCGGACGAGCAGG
GCGTGCTAGCAAACCTGGCGAAGTGATATTACAAACCCACCATCCAGAACACACCTTGCTCAAAGCTCTGTTGACCAAGG
ATTACCGGCATTTTGCGCAGTCTGCACTGGAAGAGCGGAAAATTGCCCAACTTCCCCCGTTTAGTTTTCTAACGCTATTT
CGCGCAGAAGCCAATCACAGCGAAATCGTCGAAACATTCTTACGTCAAGTGCGTATGACTCTCGAGTCGCATCCCTTGTT
TGATCACACTTGTCTCGTGCTCGGTCCAACCCCCGCTCCACTGGCCAAACGTGCGGGCAAATACCGCTGGCAGCTTCTGC
TTCAAACTCAACATCGTTCCTTGATGCAGAAAATACTCTCGAGCACGAAACCTGCTATCGATTTGTTACCAGATGCGAAA
AAAGTACGTTGGAATTTGGATATTGAGCCACAGGATCTGAGTTAG

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-102)

Primosomal protein N C-terminal domain (PriA_C)

(633-730)

DEAD/DEAH box helicase (DEAD)

(205-364)

Helicase conserved C-terminal domain (Helicase_C)

(514-589)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

43.478

100

0.436