Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AAGG05_RS14835 Genome accession   NZ_CP151934
Coordinates   3113353..3113982 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain 8178 isolate T4048     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3108353..3118982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGG05_RS14815 (AAGG05_14810) ycbZ 3108752..3110512 (-) 1761 WP_000156498.1 Lon protease family protein -
  AAGG05_RS14820 (AAGG05_14815) matP 3110698..3111150 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AAGG05_RS14825 (AAGG05_14820) ompA 3111228..3112268 (-) 1041 WP_001313715.1 porin OmpA -
  AAGG05_RS14830 (AAGG05_14825) sulA 3112625..3113134 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  AAGG05_RS14835 (AAGG05_14830) sxy/tfoX 3113353..3113982 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AAGG05_RS14840 (AAGG05_14835) yccS 3113945..3116107 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AAGG05_RS14845 (AAGG05_14840) yccF 3116117..3116563 (-) 447 WP_001261236.1 YccF domain-containing protein -
  AAGG05_RS14850 (AAGG05_14845) helD 3116686..3118740 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=891301 AAGG05_RS14835 WP_000839136.1 3113353..3113982(+) (sxy/tfoX) [Escherichia coli strain 8178 isolate T4048]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=891301 AAGG05_RS14835 WP_000839136.1 3113353..3113982(+) (sxy/tfoX) [Escherichia coli strain 8178 isolate T4048]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99