Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RYH72_RS20445 Genome accession   NZ_CP136506
Coordinates   4514757..4515473 (-) Length   238 a.a.
NCBI ID   WP_007245835.1    Uniprot ID   A0A2G7MEY6
Organism   Pseudomonas syringae pv. actinidiae strain YXH1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4509757..4520473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYH72_RS20420 (RYH72_004102) murB 4511316..4512335 (-) 1020 WP_003381110.1 UDP-N-acetylmuramate dehydrogenase -
  RYH72_RS20425 (RYH72_004103) kdsB 4512370..4513134 (-) 765 WP_003381111.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RYH72_RS20430 (RYH72_004104) - 4513131..4513316 (-) 186 WP_003381112.1 Trm112 family protein -
  RYH72_RS20435 (RYH72_004105) lpxK 4513334..4514329 (-) 996 WP_003381114.1 tetraacyldisaccharide 4'-kinase -
  RYH72_RS20440 (RYH72_004106) - 4514329..4514760 (-) 432 WP_003381117.1 biopolymer transporter ExbD -
  RYH72_RS20445 (RYH72_004107) exbB 4514757..4515473 (-) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RYH72_RS20450 (RYH72_004108) comA 4515517..4517733 (-) 2217 WP_017683999.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RYH72_RS20455 (RYH72_004109) tssI 4517971..4519998 (+) 2028 WP_017684000.1 type VI secretion system tip protein VgrG -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25863.42 Da        Isoelectric Point: 7.9105

>NTDB_id=891265 RYH72_RS20445 WP_007245835.1 4514757..4515473(-) (exbB) [Pseudomonas syringae pv. actinidiae strain YXH1]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLANSKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=891265 RYH72_RS20445 WP_007245835.1 4514757..4515473(-) (exbB) [Pseudomonas syringae pv. actinidiae strain YXH1]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCC
GATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGC
CGCACCTGCTGGGTCAGGCATGGCAGTGGATTCAGGAAAAGAAACTCGATAACGAAAAACTCAAGCAACTGCGCGCCGAC
TCGCCGCTGGGCGAAATCCTCGCCGCTGGCCTGGCCAATTCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCCGCCCGTGTCATCCATGACCTGGAACGCTACCTGAGCGCGCTGGGCTCTATCGCAGCAATGGCCCCGTTGCTCG
GTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCGGTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTG
CTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACTGCGTCGGGCCTTATCGTGGCAATCCCGGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAGGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCAAATCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7MEY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693