Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RTZ60_RS02955 Genome accession   NZ_CP136504
Coordinates   646722..647132 (+) Length   136 a.a.
NCBI ID   WP_002551738.1    Uniprot ID   A0AAT9SFQ2
Organism   Pseudomonas syringae pv. actinidiae strain JZY2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 641722..652132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTZ60_RS02925 (RTZ60_000588) - 641743..642747 (-) 1005 WP_005736952.1 aspartate carbamoyltransferase catalytic subunit -
  RTZ60_RS02930 (RTZ60_000589) pyrR 642760..643272 (-) 513 WP_003377207.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RTZ60_RS02935 (RTZ60_000590) ruvX 643371..643811 (-) 441 WP_003377205.1 Holliday junction resolvase RuvX -
  RTZ60_RS02940 (RTZ60_000591) - 643811..644383 (-) 573 WP_003377203.1 YqgE/AlgH family protein -
  RTZ60_RS02945 (RTZ60_000592) - 644459..645361 (-) 903 WP_017683391.1 energy transducer TonB -
  RTZ60_RS02950 (RTZ60_000593) gshB 645518..646477 (-) 960 WP_003377199.1 glutathione synthase -
  RTZ60_RS02955 (RTZ60_000594) pilG 646722..647132 (+) 411 WP_002551738.1 twitching motility response regulator PilG Regulator
  RTZ60_RS02960 (RTZ60_000595) pilH 647179..647544 (+) 366 WP_003377196.1 twitching motility response regulator PilH -
  RTZ60_RS02965 (RTZ60_000596) - 647559..648098 (+) 540 WP_003377194.1 chemotaxis protein CheW -
  RTZ60_RS02970 (RTZ60_000597) - 648142..650184 (+) 2043 WP_017683390.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14943.42 Da        Isoelectric Point: 8.5283

>NTDB_id=891225 RTZ60_RS02955 WP_002551738.1 646722..647132(+) (pilG) [Pseudomonas syringae pv. actinidiae strain JZY2]
MEQHASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFVAAEQHIS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=891225 RTZ60_RS02955 WP_002551738.1 646722..647132(+) (pilG) [Pseudomonas syringae pv. actinidiae strain JZY2]
ATGGAACAACACGCCTCTGCATTGAAAGTCATGGTCATCGATGACTCGAAGACCATCCGCCGCACCGCCGAAACGCTGCT
TAAAAACGCAGGCTGCGAAGTCATCACTGCGATAGACGGTTTTGACGCGCTGGCCAAGATTGCCGATAACCACCCGCGAA
TCATATTCGTCGATATCATGATGCCGCGCCTGGATGGCTACCAGACGTGCGCGCTGATCAAGAACAACCGCGCATTCAAG
TCCACGCCAGTCATCATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGGCGAATCGTCGGTTCCGATCAGTT
TTTGACAAAGCCTTTCAGCAAGGAAGAACTGCTCAGCGCGATCAAGGCTCATGTGCCGGGCTTCGTTGCAGCAGAACAAC
ACATATCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

91.912

0.691