Detailed information NTG0891215

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: RTE98_RS18745
• Genome accession: NZ_CP136501
• Coordinates: 3975150..3977381 (-)
• Length: 743 a.a.
• NCBI ID: WP_316958126.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain L27
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3970150..3982381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RTE98_RS18710 (RTE98_18710)	murB	3970540..3971559 (-)	1020	WP_316958125.1	UDP-N-acetylmuramate dehydrogenase	-
RTE98_RS18715 (RTE98_18715)	-	3971556..3972023 (-)	468	WP_200595478.1	low molecular weight protein-tyrosine-phosphatase	-
RTE98_RS18720 (RTE98_18720)	kdsB	3972025..3972789 (-)	765	WP_200595480.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RTE98_RS18725 (RTE98_18725)	-	3972786..3972971 (-)	186	WP_011913743.1	Trm112 family protein	-
RTE98_RS18730 (RTE98_18730)	lpxK	3973017..3974021 (-)	1005	WP_133456659.1	tetraacyldisaccharide 4'-kinase	-
RTE98_RS18735 (RTE98_18735)	-	3974021..3974449 (-)	429	WP_063539898.1	biopolymer transporter ExbD	-
RTE98_RS18740 (RTE98_18740)	-	3974446..3975078 (-)	633	WP_063539899.1	MotA/TolQ/ExbB proton channel family protein	-
RTE98_RS18745 (RTE98_18745)	comA	3975150..3977381 (-)	2232	WP_316958126.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
RTE98_RS18750 (RTE98_18750)	-	3977527..3978042 (+)	516	WP_063539900.1	DUF2062 domain-containing protein	-
RTE98_RS18755 (RTE98_18755)	-	3978055..3979299 (-)	1245	WP_270053426.1	lipoprotein-releasing ABC transporter permease subunit	-
RTE98_RS18760 (RTE98_18760)	lolD	3979299..3979988 (-)	690	WP_063539901.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
RTE98_RS18765 (RTE98_18765)	-	3979996..3981243 (-)	1248	WP_102840158.1	lipoprotein-releasing ABC transporter permease subunit	-
RTE98_RS18770 (RTE98_18770)	-	3981277..3981912 (+)	636	WP_081253726.1	PilZ domain-containing protein	-
RTE98_RS18775 (RTE98_18775)	-	3981916..3982224 (+)	309	WP_156243746.1	phosphodiesterase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81284.86 Da
• Isoelectric Point: 9.4134

>NTDB_id=891215 RTE98_RS18745 WP_316958126.1 3975150..3977381(-) (comA) [Stutzerimonas frequens strain L27]
MRTWMLALAAGLVLPRFLPALPAQWFCAALAAVGLLMLLRVRWVAPGLFLLGLSWACYQSQSAIDDRLPESMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSKVRLSWYDGPLLQAGERWRLAARLKRPHGMVNPHSFDYEAWLLARRIGAT
GTIKAGERLTASRASDGWRDRLRARLMAVPASDRQGAIAALVVGDDSGLSRDDWQVLQHTGTVHLMVISGQHIGMLAGLL
YGLVVLLARLGAWPRRLPWLPWACGLALSGALAYGWLAGFEVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWRWWKALTRAQWAATLGLLPLLLALGLPISASGPLANLLAVPWVSLTVPF
ALLGTLLLLLPLGGVGEALLSMVGYSLALLFDVLAAIANWQPAWIAVGLPVWALALIGVGVLLLLLPAGIPLRSLGLLLL
LPLVFPPRVEVPDGRAQVWVLDVGQGLAVLVRTREHALLYDAGPKQGDFDTGERVVVPSLRTLGVTRLDLLLLSHADNDH
SGGAEAVQRLLRVERVVSGEPSRHAPDLGAERCESGSSWQWNDVHFSVWQWQAAQDSNQQSCVLQIEANGERILLTGDID
QPAEQAWLASEQQMSSHWLLLPHHGSRSSSSEPFLHGVAAQAALISRSLHNPFGHPHPSVTARLEAFDIKAYDTALHGAI
RIDLGGFSPPELQRSQRRFWREK

Nucleotide

• Length: 2232 bp

>NTDB_id=891215 RTE98_RS18745 WP_316958126.1 3975150..3977381(-) (comA) [Stutzerimonas frequens strain L27]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGCCTGGTCCTGCCACGCTTCCTTCCTGCCTTGCCCGCGCAGTGGTTCTG
TGCGGCGCTGGCGGCTGTCGGACTGTTGATGCTGCTGCGTGTCCGCTGGGTGGCGCCGGGCCTGTTTCTGCTGGGCTTGA
GTTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGCTTGCCGGAGTCCATGGACGGTCGCACGTTCTGGATTGAG
GGGCGGGTAGTGGGGTTGCCCAGCCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCCAATCGCGCCATGCCGG
GTTGCCATCGAAGGTGCGGCTGTCCTGGTATGACGGTCCGCTGCTACAAGCCGGCGAGCGCTGGCGGCTGGCGGCGCGAC
TGAAACGGCCACATGGCATGGTCAACCCGCATTCCTTCGATTACGAAGCCTGGTTGCTGGCGCGACGTATCGGCGCCACC
GGCACGATCAAGGCCGGTGAGCGCCTGACGGCGTCGAGGGCAAGCGACGGATGGCGCGATCGGCTTCGGGCGCGGCTCAT
GGCCGTTCCGGCATCCGATCGGCAGGGCGCCATCGCGGCGCTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGACGACT
GGCAGGTGCTGCAGCACACCGGCACCGTCCACCTGATGGTCATCTCCGGGCAGCACATCGGCATGTTGGCGGGGCTGCTC
TATGGTCTGGTCGTATTGCTGGCTCGCCTGGGTGCGTGGCCGCGGCGGTTGCCATGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGCGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGGTTGCGCTTTCGCCATCTGGGCGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCCCTGGTGACATTGCAGCCCGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGTTCATGGCGCTGGTGGAAGGCCCTGACCCGGGCGCAGTGGGCGGCCACCCTCGGCCTGCTTCCGCTGTTGCTCG
CCCTGGGGCTGCCGATAAGCGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTGCCTTGGGTGAGTCTCACCGTGCCCTTT
GCGTTGCTCGGTACGCTGCTGCTGCTGCTGCCGCTGGGCGGGGTTGGCGAAGCGCTGCTGTCAATGGTCGGCTATTCGCT
GGCATTGCTGTTCGACGTCCTGGCGGCGATAGCCAATTGGCAACCCGCCTGGATTGCGGTCGGCCTGCCCGTCTGGGCGC
TGGCGTTAATCGGGGTGGGCGTCCTGTTGCTGTTGCTGCCAGCGGGTATTCCGCTGCGTTCGCTGGGTTTGCTGCTGCTA
TTGCCGCTGGTTTTCCCGCCTCGTGTGGAGGTGCCAGACGGCCGGGCGCAGGTCTGGGTATTGGATGTAGGGCAGGGCCT
GGCGGTGCTTGTACGCACCCGCGAGCATGCACTGCTCTACGATGCCGGGCCGAAGCAGGGCGACTTCGATACGGGCGAGC
GGGTGGTCGTCCCTTCGCTCCGGACCCTTGGCGTGACTCGGTTGGACCTGCTGTTGCTGAGTCATGCCGATAATGATCAT
TCGGGCGGTGCGGAGGCGGTCCAGCGGCTGCTCCGGGTCGAGCGGGTGGTCAGTGGCGAGCCGTCTCGCCACGCGCCGGA
TCTGGGCGCCGAACGTTGCGAAAGCGGTAGCAGCTGGCAGTGGAACGATGTGCACTTCAGTGTGTGGCAATGGCAGGCGG
CGCAGGACAGCAACCAGCAGTCCTGCGTGCTGCAGATCGAGGCCAACGGTGAGCGAATCCTGCTCACCGGTGACATCGAC
CAGCCCGCCGAGCAGGCTTGGCTGGCAAGTGAGCAGCAGATGTCATCGCACTGGCTGCTGCTGCCCCATCACGGCAGCCG
CAGCTCCTCGTCGGAGCCGTTTCTGCATGGCGTGGCCGCGCAAGCCGCGCTGATCTCGCGAAGTCTGCACAATCCGTTCG
GCCACCCGCACCCGAGCGTGACCGCGCGGCTCGAGGCGTTCGATATCAAGGCCTACGACACCGCGTTGCATGGCGCCATC
CGGATCGATCTGGGCGGTTTTTCGCCGCCGGAGCTGCAACGCTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-168)

• Competence protein (Competence) (201-466)

• Metallo-beta-lactamase superfamily (Lactamase_B) (502-655)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.48	96.366	0.641
comA	Ralstonia pseudosolanacearum GMI1000	36.41	100	0.382