Detailed information NTG0891192

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RTE98_RS03520
• Genome accession: NZ_CP136501
• Coordinates: 774938..776206 (-)
• Length: 422 a.a.
• NCBI ID: WP_316958614.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain L27
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 769938..781206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RTE98_RS03505 (RTE98_03505)	rpoH	772288..773142 (-)	855	WP_003297176.1	RNA polymerase sigma factor RpoH	-
RTE98_RS03510 (RTE98_03510)	ftsX	773254..774273 (-)	1020	WP_110778808.1	permease-like cell division protein FtsX	-
RTE98_RS03515 (RTE98_03515)	ftsE	774270..774941 (-)	672	WP_045665759.1	cell division ATP-binding protein FtsE	-
RTE98_RS03520 (RTE98_03520)	pilA	774938..776206 (-)	1269	WP_316958614.1	signal recognition particle-docking protein FtsY	Machinery gene
RTE98_RS03525 (RTE98_03525)	-	776435..777787 (+)	1353	WP_200630312.1	pitrilysin family protein	-
RTE98_RS03530 (RTE98_03530)	-	777780..779312 (+)	1533	WP_230724203.1	pitrilysin family protein	-
RTE98_RS03535 (RTE98_03535)	rsmD	779312..779914 (+)	603	WP_267935808.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RTE98_RS03540 (RTE98_03540)	-	779926..780330 (-)	405	WP_013984344.1	hypothetical protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 44992.36 Da
• Isoelectric Point: 4.7886

>NTDB_id=891192 RTE98_RS03520 WP_316958614.1 774938..776206(-) (pilA) [Stutzerimonas frequens strain L27]
MFGSNDDKKTPAEPGEKKGLFGWLRKKPQPAPAEQPAAEQPHSESVEQTGAPVESPVATPQEEQPGRAVEADMQPAEVIE
PVLLHPEPEPEPEPEPEPVPAPAVAPAPEAPTKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTA
DVGVEATTAIMQNLIRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIDAGKRPYVILVVGVNGVGKTTTIGKLAKKL
QLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVVAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEEL
KKVRRVMGKLDESAPHEVLLVLDAGTGQNAINQTKQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGESI
DDLRTFEADAFVKALFSQREDA

Nucleotide

• Length: 1269 bp

>NTDB_id=891192 RTE98_RS03520 WP_316958614.1 774938..776206(-) (pilA) [Stutzerimonas frequens strain L27]
ATGTTTGGTTCCAACGACGACAAGAAGACGCCGGCCGAGCCCGGTGAAAAGAAAGGCCTGTTCGGCTGGCTGCGCAAGAA
GCCGCAGCCCGCGCCGGCAGAGCAACCCGCCGCCGAACAGCCGCACAGCGAATCGGTCGAGCAGACCGGGGCGCCTGTCG
AATCGCCTGTCGCGACACCTCAGGAAGAGCAACCGGGGCGCGCGGTCGAGGCTGATATGCAGCCGGCTGAGGTCATAGAG
CCGGTGCTGCTGCACCCTGAACCCGAACCCGAACCCGAGCCCGAGCCCGAGCCGGTACCTGCCCCGGCCGTAGCGCCCGC
GCCGGAGGCTCCAACCAAGCTCGGCTTCTTCGCTCGCCTGCGCCAGGGGCTGTCGAAAACCAGCGCCAGCATTGGCGAAG
GTATGGCCAGCCTGTTCCTCGGCAAGAAGGCCATCGACGACGATCTGCTCGACGAGCTGGAAACCCGCCTGCTCACCGCC
GACGTCGGCGTCGAGGCGACCACCGCGATCATGCAGAATCTCATCCGGCGCGTCTCGCGCAAGGAGTTGGCCGACAGCGG
CGCGCTCTACACCGCGCTGCAGGAAGAGCTTGTTGGCCTGCTCAAGCCGGTCGAGCAGCCGCTGGCGATCGATGCTGGCA
AGCGCCCGTATGTGATCCTGGTGGTCGGCGTGAACGGCGTCGGCAAGACCACCACCATCGGCAAGCTGGCCAAGAAGCTG
CAGCTCGACGGCAAGAAGGTCATGCTCGCCGCCGGCGACACATTCCGCGCCGCGGCGGTGGAGCAGCTGCAGGTCTGGGG
CGAGCGCAACGGCATTCCGGTGGTCGCCCAGCACACCGGTGCCGATTCCGCCTCGGTGATCTTCGATGCGGTGCAGGCCG
CCAAGGCGCGCGGCATCGACGTGCTGATCGCCGACACCGCGGGCCGTCTGCATACCAAGGACAACCTGATGGAAGAGCTG
AAGAAAGTCCGTCGGGTGATGGGCAAGCTCGACGAGTCGGCTCCCCACGAAGTCCTACTGGTACTCGACGCCGGCACTGG
CCAGAACGCCATCAACCAGACCAAGCAGTTCAACCAGGCGGTCGAGCTGACCGGGCTGGCACTGACCAAGCTCGACGGCA
CCGCCAAGGGCGGCGTGATCTTCGCGCTGGCCAAGCAGTTCGGCACGCCGATCCGCTACATCGGCGTGGGTGAAAGCATC
GACGATCTGCGCACCTTCGAGGCCGATGCCTTCGTCAAGGCGCTGTTCTCCCAGCGGGAAGACGCATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (132-197)

• SRP54-type protein, GTPase domain (SRP54) (217-416)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.585	100	0.488