Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AAGG03_RS01390 Genome accession   NZ_CP151932
Coordinates   301821..302450 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain 8178 isolate T4039     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 296821..307450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGG03_RS01370 (AAGG03_01370) ycbZ 297221..298981 (-) 1761 WP_000156498.1 Lon protease family protein -
  AAGG03_RS01375 (AAGG03_01375) matP 299167..299619 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AAGG03_RS01380 (AAGG03_01380) ompA 299697..300737 (-) 1041 WP_001313715.1 porin OmpA -
  AAGG03_RS01385 (AAGG03_01385) sulA 301093..301602 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  AAGG03_RS01390 (AAGG03_01390) sxy/tfoX 301821..302450 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AAGG03_RS01395 (AAGG03_01395) yccS 302413..304575 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AAGG03_RS01400 (AAGG03_01400) yccF 304585..305031 (-) 447 WP_001261236.1 YccF domain-containing protein -
  AAGG03_RS01405 (AAGG03_01405) helD 305154..307208 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=891159 AAGG03_RS01390 WP_000839136.1 301821..302450(+) (sxy/tfoX) [Escherichia coli strain 8178 isolate T4039]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=891159 AAGG03_RS01390 WP_000839136.1 301821..302450(+) (sxy/tfoX) [Escherichia coli strain 8178 isolate T4039]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99