Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU38_RS10325 Genome accession   NZ_AP024885
Coordinates   2239736..2240251 (-) Length   171 a.a.
NCBI ID   WP_261823012.1    Uniprot ID   -
Organism   Vibrio neonatus strain JCM 21521     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2234736..2245251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU38_RS10300 rimM 2234929..2235459 (-) 531 WP_021712251.1 ribosome maturation factor RimM -
  OCU38_RS10305 rpsP 2235493..2235741 (-) 249 WP_017027436.1 30S ribosomal protein S16 -
  OCU38_RS10310 ffh 2235990..2237381 (-) 1392 WP_261823009.1 signal recognition particle protein -
  OCU38_RS10315 - 2237532..2238326 (+) 795 WP_261823010.1 inner membrane protein YpjD -
  OCU38_RS10320 - 2238407..2239669 (+) 1263 WP_261823011.1 HlyC/CorC family transporter -
  OCU38_RS10325 luxS 2239736..2240251 (-) 516 WP_261823012.1 S-ribosylhomocysteine lyase Regulator
  OCU38_RS10330 gshA 2240267..2241832 (-) 1566 WP_261824279.1 glutamate--cysteine ligase -
  OCU38_RS10335 - 2241932..2244817 (-) 2886 WP_261823013.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18646.34 Da        Isoelectric Point: 4.6850

>NTDB_id=89112 OCU38_RS10325 WP_261823012.1 2239736..2240251(-) (luxS) [Vibrio neonatus strain JCM 21521]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPSGDTITVFDLRFTQPNKDILSETGIHTLEHLYAGFMRNHLNGAAVEIIDISP
MGCRTGFYMSLIGTPSESEVATAWIASMHDVLKVEGQNKIPELNEYQCGTAAMHSLEEAKAIASAILEAGVSVNKNDELA
LPEEMLQTLKV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89112 OCU38_RS10325 WP_261823012.1 2239736..2240251(-) (luxS) [Vibrio neonatus strain JCM 21521]
ATGCCTTTACTAGATAGTTTTACCGTTGACCACACTAAAATGAATGCACCAGCTGTACGTGTGGCTAAAACAATGCAGAC
TCCAAGCGGTGATACGATTACTGTCTTCGATCTTCGTTTTACTCAGCCAAACAAAGACATTTTGTCTGAGACGGGTATCC
ATACTCTTGAACACCTTTACGCAGGCTTTATGCGTAACCACTTAAACGGTGCGGCTGTGGAGATCATTGATATTTCTCCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCCTAATTGGTACACCATCAGAGTCAGAAGTGGCAACTGCTTGGATTGCATC
TATGCACGATGTACTTAAAGTAGAAGGTCAAAACAAAATTCCTGAGCTGAACGAATACCAATGTGGTACAGCGGCAATGC
ACTCTCTAGAAGAAGCAAAAGCCATTGCTAGCGCTATCTTAGAAGCGGGTGTATCTGTGAATAAGAATGACGAATTAGCA
CTGCCAGAAGAGATGCTACAAACACTAAAAGTGTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.211

100

0.842

Multiple sequence alignment