Detailed information NTG0089110

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCU38_RS10055
• Genome accession: NZ_AP024885
• Coordinates: 2171738..2175124 (+)
• Length: 1128 a.a.
• NCBI ID: WP_261822972.1
• Uniprot ID: -
• Organism: Vibrio neonatus strain JCM 21521
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2166738..2180124

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU38_RS10035	erpA	2167566..2167907 (-)	342	WP_023405304.1	iron-sulfur cluster insertion protein ErpA	-
OCU38_RS10040	hemL	2168107..2169393 (+)	1287	WP_261822969.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCU38_RS10045	-	2169509..2170594 (+)	1086	WP_261822970.1	AI-2E family transporter	-
OCU38_RS10050	rsmC	2170607..2171626 (+)	1020	WP_261822971.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCU38_RS10055	chiS	2171738..2175124 (+)	3387	WP_261822972.1	response regulator	Regulator
OCU38_RS10060	-	2175698..2177371 (+)	1674	WP_261822973.1	ABC transporter substrate-binding protein	-
OCU38_RS10065	-	2177521..2178507 (+)	987	WP_021712206.1	ABC transporter permease	-
OCU38_RS10070	-	2178509..2179543 (+)	1035	WP_261822974.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 128244.91 Da
• Isoelectric Point: 5.8132

>NTDB_id=89110 OCU38_RS10055 WP_261822972.1 2171738..2175124(+) (chiS) [Vibrio neonatus strain JCM 21521]
MSKHRSRPKFKRLKSTLMGAFLLVSLPPMLLIAFFFLQSHIEDLQEQSKTYLTSMRDGTTTQVTAYVKNLDSEVIGFVHS
ELAYASGGRFYGLIDSFRRLGPDIEKSRLIGQQQYIPGSGDKVNAQTAKENSNYLSVRRYQLLHTRYHSTYQSLLQRSDF
DDLALVDLDGNVAYSVQKHNYYSTNLNTGPYKNSNLGVLFQRLKSYVETNKNTFDKYNDIVLMSDFAKDSNSKENKKVAW
FAAPIVQQGYLHSYAFFRLPLSSLTHLIDNTSSDYPNILLLDESQKLLTQTTAKNVEKSSFITTKALQGISQVETYANTK
GQSMIAAYSPLYIHDLKWAVIAETPENIAFSRVNKLYSIFLLIVLSVTVGIVVCSHYLSNFITRPLLKLAWTAERISTGD
LNEHVEGTEHEDEIGRLAISFERMQRSIREKIDLIHQQNKELAYNLETIAIQNKELQRADKLKDEFLATTSHELRTPLHG
MIGVAQAIIGEAHGSIPAAQRYQLEIIINSGHRLSNLVDDLLDYHKMQYGQLKLESMAVSLALTSQLVIELSKHLIDKKP
VRIINQIDDDLPMVSADPQRLEQILYNLVGNAMKFTNEGKIILTAEPNGDYLKVQVIDTGHGIDKDDLEHIFEPLIQGHS
ASYHQGTGLGLSISKQLIEIMHGELSVSSQPMLGTTFTMRLPLANEEQLQAFDSNREVVHYTREDILFEEPSQPQLNNSN
GKRVLIADDEPVNLKVLESFLRIEGYSVISATNGRQVLDIIAQEKPDILLLDIMMPELSGFEVCKYLRELYSYNELPIIM
LTALGQNEDKIKGFECGANDYLVKPFNKQELSARIQVHIDASLSEERKQENESLNAELMQREKVESLLLETQAKLLEQLE
STPEAIICINESHKITFANKTAIDLFKRSSEQIKRSQIEEFIAPKYLQFDQPHRSVNIDLFVGGTKQVIASDIFTLPLET
GLRGMIIFNFSPDEANQRINNLEVALDALANYAFAGDKSQLEQLKELGDEFSGLVKMMHYDKESKQENMRQLLVDCMSSA
LEYWDSHQGNSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLNSLDFILANSDNDNAQRAQLLELRE
QLQHIVSQ

Nucleotide

• Length: 3387 bp

>NTDB_id=89110 OCU38_RS10055 WP_261822972.1 2171738..2175124(+) (chiS) [Vibrio neonatus strain JCM 21521]
ATGTCAAAACATCGCTCTCGACCAAAGTTTAAACGACTGAAAAGTACCTTAATGGGTGCCTTTTTGTTGGTTAGTCTTCC
TCCAATGCTGCTCATTGCCTTCTTTTTTCTTCAATCCCATATTGAAGATCTTCAAGAGCAGAGCAAAACCTATTTAACTT
CGATGAGGGATGGCACCACCACTCAAGTAACCGCCTACGTAAAAAACCTAGACTCTGAAGTCATTGGTTTTGTTCATTCC
GAACTTGCTTATGCCAGTGGTGGTCGTTTTTACGGATTGATTGATTCTTTTAGACGCCTTGGCCCTGATATTGAGAAATC
TCGGCTAATTGGTCAGCAACAATACATTCCCGGCTCTGGAGATAAGGTCAATGCGCAAACCGCCAAAGAGAACAGCAATT
ACCTTAGTGTAAGACGCTACCAGCTGTTACATACTCGCTACCACTCAACCTATCAAAGTCTGTTACAGCGTTCTGATTTC
GACGATCTTGCCTTAGTGGATCTCGATGGTAATGTCGCCTATTCAGTACAAAAACATAATTACTATTCCACCAATTTAAA
TACTGGCCCTTATAAAAACAGCAACTTAGGCGTGCTATTTCAACGCTTAAAGAGTTACGTAGAAACCAATAAAAATACCT
TCGATAAGTATAATGATATTGTACTTATGAGCGATTTTGCCAAAGACTCCAACAGCAAAGAGAATAAAAAAGTGGCTTGG
TTTGCCGCGCCTATCGTGCAACAGGGATACCTGCACAGCTATGCGTTTTTCCGCTTGCCTCTCTCCTCTTTAACGCATCT
GATTGACAATACCAGCAGCGATTATCCCAACATCTTATTGCTTGATGAGTCGCAAAAATTATTGACTCAAACCACAGCTA
AAAACGTAGAGAAAAGCAGTTTTATCACCACCAAGGCACTGCAAGGGATCAGTCAAGTTGAAACCTATGCCAATACTAAA
GGCCAAAGCATGATTGCCGCTTACTCGCCTCTCTATATTCACGATTTAAAGTGGGCGGTTATTGCGGAGACACCAGAAAA
CATCGCCTTTTCTCGGGTCAATAAACTCTACTCTATCTTTTTACTGATAGTGCTGAGCGTAACCGTCGGTATTGTTGTTT
GCTCGCACTACCTATCGAATTTCATTACTCGTCCGTTACTCAAATTGGCATGGACCGCAGAGCGCATCTCCACTGGTGAT
CTTAACGAGCACGTTGAAGGAACAGAGCATGAAGATGAAATAGGTCGTCTGGCGATTAGCTTTGAGCGCATGCAGCGTTC
GATTCGAGAAAAGATTGATCTTATCCATCAACAAAACAAAGAGCTCGCCTACAACTTAGAAACCATTGCTATTCAAAACA
AAGAGCTACAAAGAGCTGATAAATTAAAAGATGAGTTTCTTGCCACTACATCTCACGAATTACGCACCCCTTTACATGGC
ATGATTGGGGTTGCGCAAGCCATCATAGGTGAAGCTCATGGCAGCATTCCTGCGGCGCAGCGCTATCAGTTAGAAATTAT
CATCAATAGTGGACATAGACTGTCGAACTTAGTGGATGATCTTTTGGATTATCACAAAATGCAGTACGGACAATTAAAGC
TTGAGTCGATGGCGGTATCTCTGGCTTTAACATCACAATTGGTGATTGAGCTCTCTAAGCATTTAATTGATAAAAAACCG
GTGCGAATTATCAATCAAATTGATGATGATCTACCTATGGTCAGTGCCGATCCGCAAAGGTTAGAGCAAATCTTATATAA
CCTCGTGGGTAACGCGATGAAGTTTACCAACGAGGGCAAAATCATTTTGACCGCCGAGCCCAATGGTGACTACTTAAAAG
TGCAAGTGATCGATACTGGACACGGCATTGATAAAGACGATCTTGAGCATATTTTTGAACCTCTAATTCAAGGACATTCA
GCGAGCTATCATCAAGGCACTGGATTAGGTTTATCCATCAGTAAGCAGTTAATAGAAATCATGCATGGCGAGCTTAGCGT
TAGCAGTCAGCCTATGCTGGGTACCACTTTTACCATGCGCCTTCCGCTGGCCAATGAAGAACAACTACAAGCCTTTGATA
GTAATCGCGAGGTCGTACACTACACCCGTGAAGATATATTATTTGAAGAGCCTTCACAGCCTCAGCTCAATAACAGCAAC
GGGAAACGAGTGTTAATTGCCGATGATGAGCCGGTTAATTTAAAAGTGTTGGAAAGCTTTTTACGCATTGAAGGCTATAG
CGTAATTAGCGCTACCAATGGGCGACAGGTGCTCGATATCATCGCGCAAGAAAAACCTGATATTTTATTACTCGATATCA
TGATGCCAGAGCTCAGTGGATTTGAGGTGTGTAAGTACTTACGCGAGCTGTATTCCTATAATGAGCTTCCGATCATTATG
CTCACCGCGCTTGGGCAAAATGAGGATAAGATCAAAGGCTTTGAATGTGGCGCTAACGACTACTTGGTCAAACCTTTTAA
TAAACAAGAGTTGTCTGCTCGTATTCAAGTACACATTGATGCCAGCCTTTCTGAGGAGCGTAAGCAAGAGAATGAATCCT
TAAACGCGGAATTAATGCAAAGGGAAAAAGTTGAGTCCTTGCTACTGGAAACCCAAGCGAAATTGCTCGAGCAATTAGAA
AGCACCCCAGAGGCGATTATCTGCATCAATGAAAGCCATAAGATAACCTTTGCCAATAAAACCGCCATAGACCTATTTAA
ACGCTCTAGTGAACAGATAAAACGTTCGCAAATAGAAGAGTTTATTGCGCCAAAATATCTGCAATTTGATCAGCCACATC
GCAGCGTTAATATTGATTTATTCGTCGGTGGAACCAAGCAAGTCATCGCCAGTGATATCTTTACTCTGCCCCTAGAAACA
GGGCTTCGCGGTATGATCATCTTTAACTTTAGCCCAGATGAAGCAAACCAAAGAATCAACAACCTAGAGGTCGCATTAGA
TGCGCTAGCCAATTACGCCTTTGCCGGAGATAAATCCCAGCTAGAACAGCTCAAAGAGCTTGGAGATGAGTTCTCTGGCT
TAGTGAAAATGATGCACTATGACAAAGAAAGCAAACAGGAAAATATGCGTCAACTGCTGGTGGATTGCATGTCGAGTGCA
TTGGAGTATTGGGACAGCCATCAAGGCAATAGCAAGTTTACTTTTGCTGAACAAAGTGGCTTGTGGCGAGTGTATTTAGA
CAGAAGCACCCTGCAAACTCGCACCTTGGATAAATACCTAAGAGTTGAAACCTTACCTAAAACGCCTCGCTGGCGCACGG
TACTCAATTCATTAGACTTTATCCTAGCCAATAGCGATAACGACAATGCGCAACGAGCGCAATTGCTAGAGCTGCGAGAG
CAACTACAACATATCGTTTCGCAATAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (463-529)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (577-684)

• HAMP domain (HAMP) (378-430)

• Response regulator receiver domain (Response_reg) (724-836)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	55.556	100	0.559