Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RYX44_RS26585 Genome accession   NZ_CP136432
Coordinates   5603679..5604236 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain XM8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5598679..5609236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX44_RS26565 pilR 5599955..5601292 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  RYX44_RS26570 thiO 5601338..5602432 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  RYX44_RS26575 - 5602567..5603076 (+) 510 WP_023084776.1 Tfp pilus assembly protein FimT/FimU -
  RYX44_RS26580 - 5603182..5603688 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  RYX44_RS26585 pilV 5603679..5604236 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  RYX44_RS26590 pilW 5604233..5605057 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  RYX44_RS26595 pilX 5605054..5605641 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  RYX44_RS26600 pilY1 5605653..5609144 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=891098 RYX44_RS26585 WP_003119423.1 5603679..5604236(+) (pilV) [Pseudomonas aeruginosa strain XM8]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=891098 RYX44_RS26585 WP_003119423.1 5603679..5604236(+) (pilV) [Pseudomonas aeruginosa strain XM8]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995