Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RYX39_RS14235 Genome accession   NZ_CP136430
Coordinates   2753018..2753764 (-) Length   248 a.a.
NCBI ID   WP_127696691.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2748018..2758764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS14210 (RYX39_14210) mreC 2748426..2749298 (-) 873 WP_024122356.1 rod shape-determining protein MreC -
  RYX39_RS14215 (RYX39_14215) mreB 2749329..2750342 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  RYX39_RS14220 (RYX39_14220) radC 2750434..2751129 (-) 696 WP_024122357.1 DNA repair protein RadC -
  RYX39_RS14225 (RYX39_14225) - 2751167..2751736 (-) 570 WP_024122358.1 Maf family nucleotide pyrophosphatase -
  RYX39_RS14230 (RYX39_14230) - 2751887..2752885 (-) 999 WP_105953484.1 SPOR domain-containing protein -
  RYX39_RS14235 (RYX39_14235) comC 2753018..2753764 (-) 747 WP_127696691.1 A24 family peptidase Machinery gene
  RYX39_RS14240 (RYX39_14240) - 2753905..2755197 (-) 1293 WP_255004763.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RYX39_RS14245 (RYX39_14245) valS 2755257..2757899 (-) 2643 WP_024122363.1 valine--tRNA ligase -
  RYX39_RS14250 (RYX39_14250) - 2758348..2758539 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26574.07 Da        Isoelectric Point: 9.7865

>NTDB_id=891050 RYX39_RS14235 WP_127696691.1 2753018..2753764(-) (comC) [Bacillus halotolerans strain Q2H2]
MIQILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALVFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDVKLFAVIGLVLGVKMLAAAFFFSVFIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=891050 RYX39_RS14235 WP_127696691.1 2753018..2753764(-) (comC) [Bacillus halotolerans strain Q2H2]
ATGATTCAGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCAGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGGTGTTTCTATCTCTTCTAAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCAGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATGTTAAATTATTTGCCGTTATTGGCCTTGTGCTTGGTGTAAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCAGTTTTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

80.242

100

0.802