Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RYX39_RS13290 Genome accession   NZ_CP136430
Coordinates   2584475..2584900 (-) Length   141 a.a.
NCBI ID   WP_255003576.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2579475..2589900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS13260 (RYX39_13260) - 2579714..2579848 (-) 135 WP_010335019.1 hypothetical protein -
  RYX39_RS13265 (RYX39_13265) - 2579926..2580657 (-) 732 WP_105953571.1 SGNH/GDSL hydrolase family protein -
  RYX39_RS13270 (RYX39_13270) - 2580904..2581656 (-) 753 WP_127696751.1 N-acetylmuramoyl-L-alanine amidase -
  RYX39_RS13275 (RYX39_13275) - 2581851..2582477 (+) 627 WP_024122122.1 TVP38/TMEM64 family protein -
  RYX39_RS13280 (RYX39_13280) gnd 2582499..2583392 (-) 894 WP_106020128.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  RYX39_RS13285 (RYX39_13285) - 2583713..2584441 (+) 729 WP_255003574.1 DUF308 domain-containing protein -
  RYX39_RS13290 (RYX39_13290) nucA/comI 2584475..2584900 (-) 426 WP_255003576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RYX39_RS13295 (RYX39_13295) sigK 2585077..2585805 (+) 729 WP_174754429.1 RNA polymerase sporulation sigma factor SigK -
  RYX39_RS13300 (RYX39_13300) fumC 2586379..2587767 (-) 1389 WP_255003579.1 class II fumarate hydratase -
  RYX39_RS13305 (RYX39_13305) - 2587934..2588824 (+) 891 WP_255003581.1 LysR family transcriptional regulator -
  RYX39_RS13310 (RYX39_13310) - 2589245..2589408 (-) 164 Protein_2577 recombinase family protein -
  RYX39_RS13315 (RYX39_13315) - 2589366..2589544 (-) 179 Protein_2578 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15480.62 Da        Isoelectric Point: 5.2217

>NTDB_id=891046 RYX39_RS13290 WP_255003576.1 2584475..2584900(-) (nucA/comI) [Bacillus halotolerans strain Q2H2]
MKRWMAMLLLAAAVFLGLLGKDMAAPQQVKGAALYDKILYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=891046 RYX39_RS13290 WP_255003576.1 2584475..2584900(-) (nucA/comI) [Bacillus halotolerans strain Q2H2]
ATGAAAAGATGGATGGCAATGCTTCTTCTGGCGGCAGCAGTTTTTCTTGGTTTATTGGGAAAGGATATGGCGGCTCCGCA
ACAGGTCAAGGGGGCTGCTTTATATGACAAAATTTTATACTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGATGGAGCGGACAAAAGGCGGGAGGAATCATTA
AAAGGAATTCCGACGAAGCCTGGCTACGATCGGGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGCGCCGGAGCCGA
TGTCCGATATGTAACGCCTTCTGATAATCGCGGCGCCGGTTCATGGGTAGGAAATCAAATGAGCAGTTATCCAGATGGCA
CCAAAGTGTTGTTTATAGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.905

89.362

0.553