Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RYX39_RS11520 Genome accession   NZ_CP136430
Coordinates   2274118..2274738 (+) Length   206 a.a.
NCBI ID   WP_024121833.1    Uniprot ID   A0A9Q6A9A0
Organism   Bacillus halotolerans strain Q2H2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2269118..2279738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS11480 (RYX39_11480) - 2270256..2270762 (-) 507 WP_106020332.1 PTS glucose transporter subunit IIA -
  RYX39_RS11485 (RYX39_11485) - 2270899..2271318 (+) 420 WP_106020010.1 Hsp20/alpha crystallin family protein -
  RYX39_RS11490 (RYX39_11490) - 2271340..2271714 (-) 375 WP_024121828.1 YppG family protein -
  RYX39_RS11495 (RYX39_11495) - 2271902..2272090 (+) 189 WP_106020011.1 YppF family protein -
  RYX39_RS11500 (RYX39_11500) - 2272125..2272496 (-) 372 WP_024121830.1 YppE family protein -
  RYX39_RS11505 (RYX39_11505) - 2272542..2272787 (-) 246 WP_095713163.1 DUF5446 family protein -
  RYX39_RS11510 (RYX39_11510) sspM 2272985..2273089 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  RYX39_RS11515 (RYX39_11515) - 2273115..2274077 (-) 963 WP_188323085.1 DUF2515 domain-containing protein -
  RYX39_RS11520 (RYX39_11520) recU 2274118..2274738 (+) 621 WP_024121833.1 Holliday junction resolvase RecU Machinery gene
  RYX39_RS11525 (RYX39_11525) - 2274760..2277507 (+) 2748 WP_255003230.1 PBP1A family penicillin-binding protein -
  RYX39_RS11530 (RYX39_11530) - 2277581..2278075 (-) 495 WP_255003232.1 YpoC family protein -
  RYX39_RS11535 (RYX39_11535) nth 2278072..2278731 (-) 660 WP_255003234.1 endonuclease III -
  RYX39_RS11540 (RYX39_11540) dnaD 2278750..2279448 (-) 699 WP_044155229.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23934.13 Da        Isoelectric Point: 9.7224

>NTDB_id=891030 RYX39_RS11520 WP_024121833.1 2274118..2274738(+) (recU) [Bacillus halotolerans strain Q2H2]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFGQVYFLEADKLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=891030 RYX39_RS11520 WP_024121833.1 2274118..2274738(+) (recU) [Bacillus halotolerans strain Q2H2]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGTCAGGTTTATTTTTTAGAAGCCGATAAGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.087

100

0.971