Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RYX39_RS10735 Genome accession   NZ_CP136430
Coordinates   2141023..2142153 (+) Length   376 a.a.
NCBI ID   WP_188323045.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2133680..2150497 2141023..2142153 within 0


Gene organization within MGE regions


Location: 2133680..2150497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS10655 (RYX39_10655) - 2133680..2134417 (-) 738 WP_127696874.1 hypothetical protein -
  RYX39_RS10660 (RYX39_10660) - 2134460..2134705 (-) 246 Protein_2051 hypothetical protein -
  RYX39_RS10665 (RYX39_10665) - 2134761..2134925 (-) 165 WP_127696873.1 hypothetical protein -
  RYX39_RS10670 (RYX39_10670) - 2134973..2135341 (-) 369 WP_106022517.1 hypothetical protein -
  RYX39_RS10675 (RYX39_10675) - 2135885..2136101 (-) 217 Protein_2054 hypothetical protein -
  RYX39_RS10680 (RYX39_10680) - 2136105..2136356 (-) 252 Protein_2055 hypothetical protein -
  RYX39_RS10685 (RYX39_10685) - 2136427..2136606 (+) 180 WP_106022516.1 hypothetical protein -
  RYX39_RS10690 (RYX39_10690) - 2136694..2137317 (-) 624 WP_024571441.1 hypothetical protein -
  RYX39_RS10695 (RYX39_10695) - 2137819..2138049 (+) 231 WP_127696872.1 hypothetical protein -
  RYX39_RS10700 (RYX39_10700) - 2138057..2138116 (-) 60 WP_255004945.1 hypothetical protein -
  RYX39_RS10705 (RYX39_10705) - 2138232..2138378 (-) 147 WP_316961074.1 UPF0715 family protein -
  RYX39_RS10710 (RYX39_10710) - 2138689..2138834 (-) 146 Protein_2061 XRE family transcriptional regulator -
  RYX39_RS10715 (RYX39_10715) - 2139106..2139585 (-) 480 WP_223203877.1 hypothetical protein -
  RYX39_RS10720 (RYX39_10720) - 2139679..2139912 (-) 234 WP_106022513.1 hypothetical protein -
  RYX39_RS10725 (RYX39_10725) - 2140260..2140520 (+) 261 WP_081638323.1 hypothetical protein -
  RYX39_RS21415 - 2140845..2140889 (+) 45 WP_372588338.1 hypothetical protein -
  RYX39_RS10735 (RYX39_10735) rapC 2141023..2142153 (+) 1131 WP_188323045.1 tetratricopeptide repeat protein Regulator
  RYX39_RS10740 (RYX39_10740) - 2142143..2142286 (+) 144 WP_024121692.1 hypothetical protein -
  RYX39_RS10745 (RYX39_10745) - 2142315..2143202 (-) 888 Protein_2068 UV damage repair protein UvrX -
  RYX39_RS10750 (RYX39_10750) ppsA 2143496..2146099 (-) 2604 WP_255004931.1 phosphoenolpyruvate synthase -
  RYX39_RS10755 (RYX39_10755) - 2146357..2147507 (+) 1151 WP_283912942.1 IS3 family transposase -
  RYX39_RS10760 (RYX39_10760) - 2147901..2147985 (+) 85 Protein_2071 putative holin-like toxin -
  RYX39_RS10765 (RYX39_10765) csaA 2148628..2148960 (-) 333 WP_105955047.1 chaperone CsaA -
  RYX39_RS10770 (RYX39_10770) - 2149023..2149745 (-) 723 WP_106022154.1 helix-turn-helix domain-containing protein -
  RYX39_RS10775 (RYX39_10775) - 2149745..2150497 (-) 753 WP_106021262.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44305.06 Da        Isoelectric Point: 6.1971

>NTDB_id=891029 RYX39_RS10735 WP_188323045.1 2141023..2142153(+) (rapC) [Bacillus halotolerans strain Q2H2]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYERDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGNEKAKAINDDVLIAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=891029 RYX39_RS10735 WP_188323045.1 2141023..2142153(+) (rapC) [Bacillus halotolerans strain Q2H2]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAACACAAACTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCATTGTATGAAAGAGATAAAAGCGATCTCCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAAACGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452