Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RYX39_RS08065 Genome accession   NZ_CP136430
Coordinates   1547282..1547560 (+) Length   92 a.a.
NCBI ID   WP_095714714.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542282..1552560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS08045 (RYX39_08045) - 1543473..1544384 (+) 912 WP_101865186.1 ketopantoate reductase family protein -
  RYX39_RS08050 (RYX39_08050) - 1544412..1545644 (-) 1233 WP_044156760.1 aminopeptidase -
  RYX39_RS08055 (RYX39_08055) - 1545758..1545889 (-) 132 WP_024121251.1 protein YkpC -
  RYX39_RS08060 (RYX39_08060) mreBH 1545992..1546999 (-) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  RYX39_RS08065 (RYX39_08065) abrB 1547282..1547560 (+) 279 WP_095714714.1 transcriptional regulator AbhA Regulator
  RYX39_RS08070 (RYX39_08070) kinC 1547751..1549037 (+) 1287 WP_127695321.1 two-component sensor histidine kinase KinC -
  RYX39_RS08075 (RYX39_08075) - 1549053..1549883 (+) 831 WP_255004394.1 gamma-glutamylcyclotransferase -
  RYX39_RS08080 (RYX39_08080) ktrC 1549955..1550620 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  RYX39_RS08085 (RYX39_08085) ade 1550777..1552510 (+) 1734 WP_255004396.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10270.09 Da        Isoelectric Point: 5.8872

>NTDB_id=891024 RYX39_RS08065 WP_095714714.1 1547282..1547560(+) (abrB) [Bacillus halotolerans strain Q2H2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=891024 RYX39_RS08065 WP_095714714.1 1547282..1547560(+) (abrB) [Bacillus halotolerans strain Q2H2]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAGTACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565