Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RYX39_RS07840 Genome accession   NZ_CP136430
Coordinates   1506578..1507042 (-) Length   154 a.a.
NCBI ID   WP_044156084.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1501578..1512042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS07820 (RYX39_07820) kinA 1502042..1503874 (+) 1833 WP_255004358.1 sporulation histidine kinase KinA -
  RYX39_RS07825 (RYX39_07825) - 1503871..1505054 (-) 1184 Protein_1481 aminotransferase A -
  RYX39_RS07830 (RYX39_07830) - 1505256..1505417 (-) 162 WP_003238943.1 hypothetical protein -
  RYX39_RS07835 (RYX39_07835) cheV 1505625..1506536 (+) 912 WP_024121210.1 chemotaxis protein CheV -
  RYX39_RS07840 (RYX39_07840) kre 1506578..1507042 (-) 465 WP_044156084.1 YkyB family protein Regulator
  RYX39_RS07845 (RYX39_07845) - 1507168..1508460 (-) 1293 WP_127695343.1 MFS transporter -
  RYX39_RS07850 (RYX39_07850) - 1508536..1509030 (-) 495 WP_081638296.1 L,D-transpeptidase family protein -
  RYX39_RS07855 (RYX39_07855) - 1509088..1509948 (-) 861 WP_127695341.1 metallophosphoesterase -
  RYX39_RS07860 (RYX39_07860) fadH 1510093..1510857 (+) 765 WP_024121215.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17885.67 Da        Isoelectric Point: 10.3545

>NTDB_id=891022 RYX39_RS07840 WP_044156084.1 1506578..1507042(-) (kre) [Bacillus halotolerans strain Q2H2]
MDDHAYSKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVTNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=891022 RYX39_RS07840 WP_044156084.1 1506578..1507042(-) (kre) [Bacillus halotolerans strain Q2H2]
ATGGACGACCATGCATACTCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACCGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAGTCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTATTGCAAGAATACGTCGGCATGAAAGAAAAGCCGCTTGTGA
CGAATCGCCAGCAGCCCGCTTATCATAAGCCTGTCTTTAAGAAACTCGGCGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

98.701

100

0.987