Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RYX39_RS05825 Genome accession   NZ_CP136430
Coordinates   1143081..1143659 (+) Length   192 a.a.
NCBI ID   WP_024120818.1    Uniprot ID   A0A7G7UAM4
Organism   Bacillus halotolerans strain Q2H2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1138081..1148659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS21365 - 1138589..1139104 (-) 516 WP_369810943.1 methyl-accepting chemotaxis protein -
  RYX39_RS21370 - 1139393..1139770 (-) 378 Protein_1079 protoglobin domain-containing protein -
  RYX39_RS05810 (RYX39_05810) - 1140028..1141557 (-) 1530 WP_106022378.1 FAD-dependent oxidoreductase -
  RYX39_RS05815 (RYX39_05815) - 1141669..1142526 (+) 858 WP_059293097.1 SDR family oxidoreductase -
  RYX39_RS05820 (RYX39_05820) - 1142555..1142788 (-) 234 WP_106020598.1 IDEAL domain-containing protein -
  RYX39_RS05825 (RYX39_05825) comK 1143081..1143659 (+) 579 WP_024120818.1 competence transcription factor ComK Regulator
  RYX39_RS05830 (RYX39_05830) - 1143819..1144238 (-) 420 WP_095713685.1 hypothetical protein -
  RYX39_RS05835 (RYX39_05835) - 1144427..1145326 (-) 900 WP_106020596.1 SDR family oxidoreductase -
  RYX39_RS05840 (RYX39_05840) - 1145539..1145808 (+) 270 WP_010333640.1 excalibur calcium-binding domain-containing protein -
  RYX39_RS05845 (RYX39_05845) - 1145849..1147318 (-) 1470 WP_024120821.1 sodium:solute symporter -
  RYX39_RS05850 (RYX39_05850) - 1147315..1147515 (-) 201 WP_010333642.1 DUF3311 domain-containing protein -
  RYX39_RS05855 (RYX39_05855) - 1147741..1148103 (-) 363 WP_095713683.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22430.74 Da        Isoelectric Point: 7.6610

>NTDB_id=891010 RYX39_RS05825 WP_024120818.1 1143081..1143659(+) (comK) [Bacillus halotolerans strain Q2H2]
MSQKTDAPLESYEVNSATIAVLPEEIDGKICSKIIEKDCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=891010 RYX39_RS05825 WP_024120818.1 1143081..1143659(+) (comK) [Bacillus halotolerans strain Q2H2]
ATGAGTCAGAAAACTGACGCACCATTAGAATCATATGAAGTAAACAGCGCAACAATTGCCGTTTTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCGAAAATCATTGAAAAAGACTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAACGATGGAACTGC
CGGTCTCCTGCAATTCGTTCGAGAATCAGGTATACCGGACAGCCTGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTTGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.354

100

0.964