Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RYX39_RS00245 Genome accession   NZ_CP136430
Coordinates   44340..44630 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus halotolerans strain Q2H2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39340..49630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS00205 (RYX39_00205) darA 39360..39689 (+) 330 WP_003218295.1 cyclic di-AMP receptor DarA -
  RYX39_RS00210 (RYX39_00210) - 39702..40142 (+) 441 WP_024123606.1 YaaR family protein -
  RYX39_RS00215 (RYX39_00215) holB 40154..41143 (+) 990 WP_095714727.1 DNA polymerase III subunit delta' -
  RYX39_RS00220 (RYX39_00220) ricT 41146..41973 (+) 828 WP_010332686.1 competence/sporulation regulator complex protein RicT -
  RYX39_RS00225 (RYX39_00225) yabA 41988..42347 (+) 360 WP_010332687.1 replication initiation-control protein YabA -
  RYX39_RS00230 (RYX39_00230) - 42407..43150 (+) 744 WP_255004970.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RYX39_RS00235 (RYX39_00235) - 43137..43436 (+) 300 WP_010332689.1 GIY-YIG nuclease family protein -
  RYX39_RS00240 (RYX39_00240) rsmI 43411..44289 (+) 879 WP_103672539.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RYX39_RS00245 (RYX39_00245) abrB 44340..44630 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  RYX39_RS00250 (RYX39_00250) metG 45127..47121 (+) 1995 WP_127696180.1 methionine--tRNA ligase -
  RYX39_RS00255 (RYX39_00255) - 47200..47967 (+) 768 WP_044153506.1 TatD family hydrolase -
  RYX39_RS00260 (RYX39_00260) - 48213..49436 (+) 1224 WP_316961252.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=890994 RYX39_RS00245 WP_003226760.1 44340..44630(-) (abrB) [Bacillus halotolerans strain Q2H2]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=890994 RYX39_RS00245 WP_003226760.1 44340..44630(-) (abrB) [Bacillus halotolerans strain Q2H2]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTGATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCTGGCGGCAAATTGGTACTAAGCAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1