Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU38_RS00800 Genome accession   NZ_AP024885
Coordinates   166092..167096 (-) Length   334 a.a.
NCBI ID   WP_261823428.1    Uniprot ID   -
Organism   Vibrio neonatus strain JCM 21521     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 161092..172096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU38_RS00780 - 162178..163344 (+) 1167 WP_261823425.1 nucleotide sugar dehydrogenase -
  OCU38_RS00785 hslU 163428..164762 (-) 1335 WP_261823426.1 HslU--HslV peptidase ATPase subunit -
  OCU38_RS00790 hslV 164772..165296 (-) 525 WP_021714262.1 ATP-dependent protease subunit HslV -
  OCU38_RS00795 - 165462..166025 (-) 564 WP_261823427.1 SPOR domain-containing protein -
  OCU38_RS00800 cytR 166092..167096 (-) 1005 WP_261823428.1 DNA-binding transcriptional regulator CytR Regulator
  OCU38_RS00805 priA 167287..169488 (-) 2202 WP_261823429.1 primosomal protein N' -
  OCU38_RS00810 rpmE 169789..170007 (+) 219 WP_021714266.1 50S ribosomal protein L31 -
  OCU38_RS00815 - 170221..171483 (+) 1263 WP_023402420.1 malic enzyme-like NAD(P)-binding protein -
  OCU38_RS00820 metJ 171595..171912 (-) 318 WP_021714268.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36287.41 Da        Isoelectric Point: 4.9355

>NTDB_id=89098 OCU38_RS00800 WP_261823428.1 166092..167096(-) (cytR) [Vibrio neonatus strain JCM 21521]
MATMKDVAGLAGVSTATVSRALMNPEKVSSSTRKRVEDAVIESGYCPSTIMRSMKRNESKTLVVIVPDLCDPYFSEIIRG
IEEAASKQGYLVLHGDSSQQKCRDNSLVNLVYSKQADGLILLGTDLPIDASIAEQKNLPPMVMACEYAPELELPTVHIDN
LTASFQAVNYLAKLGHKRIGEICGPGNAPLSSFRSQGFQQALRRAGLSIDLSNTASGDFSFESGAAALRKLMNAGSPPSA
IFCHNDMMAIGAIKEAKNMGLRVPQDISFIGFDNIEFSEYCDPPLTTVSQPRYDIGYQATQMLFEILSGNEISSDSRLLE
TELIIRQSTLPPSY

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=89098 OCU38_RS00800 WP_261823428.1 166092..167096(-) (cytR) [Vibrio neonatus strain JCM 21521]
ATGGCGACGATGAAGGATGTTGCTGGACTTGCAGGAGTATCAACAGCAACAGTATCAAGGGCATTAATGAACCCGGAAAA
AGTCTCCTCTTCCACTCGCAAACGAGTAGAAGATGCGGTCATTGAATCTGGCTATTGCCCTAGCACTATCATGCGCAGCA
TGAAGCGTAATGAATCGAAAACTCTCGTCGTTATCGTCCCTGATCTTTGTGACCCTTACTTTTCTGAAATTATTCGTGGC
ATAGAAGAAGCGGCCTCAAAGCAAGGCTACCTTGTATTGCATGGTGACAGTTCACAACAAAAATGCCGTGATAATTCATT
AGTTAACTTGGTGTATTCAAAACAGGCTGATGGGTTGATTCTGCTCGGTACCGACTTACCTATCGATGCCAGTATCGCTG
AGCAAAAAAATCTGCCGCCAATGGTGATGGCGTGTGAATACGCCCCTGAATTAGAACTGCCGACTGTTCATATCGACAAC
CTTACAGCCTCGTTTCAGGCGGTGAACTATCTTGCTAAGTTAGGACACAAACGCATTGGTGAGATCTGTGGCCCTGGCAA
TGCACCACTGTCTAGCTTCCGTAGCCAAGGTTTCCAACAAGCATTACGTCGCGCTGGATTAAGTATTGATCTAAGCAACA
CTGCTAGCGGTGATTTTAGCTTTGAATCTGGCGCAGCCGCACTGCGTAAACTTATGAACGCCGGTTCTCCACCGAGCGCT
ATCTTTTGCCACAATGACATGATGGCCATTGGTGCAATCAAAGAAGCCAAAAATATGGGGCTTAGAGTCCCACAAGATAT
TTCATTTATCGGCTTTGATAATATAGAGTTCTCAGAATACTGCGATCCTCCACTTACAACCGTCTCTCAACCTCGTTATG
ATATAGGCTATCAAGCCACTCAAATGTTGTTTGAGATACTAAGTGGCAACGAGATCAGTTCTGACTCACGACTATTAGAA
ACAGAGCTGATCATTCGACAAAGTACCCTACCACCAAGTTATTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

69.88

99.401

0.695
  cytR Vibrio cholerae C6706

69.369

99.701

0.692

Multiple sequence alignment