Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   WLF14_RS25255 Genome accession   NZ_CP151816
Coordinates   5572217..5572921 (+) Length   234 a.a.
NCBI ID   WP_024077261.1    Uniprot ID   A0ACA7PCT0
Organism   Pseudomonas fluorescens strain IMGN2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5567217..5577921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WLF14_RS25240 (WLF14_25240) - 5567491..5568711 (-) 1221 WP_102624584.1 carbohydrate porin -
  WLF14_RS25245 (WLF14_25245) treC 5568782..5570428 (-) 1647 WP_342308315.1 alpha,alpha-phosphotrehalase -
  WLF14_RS25250 (WLF14_25250) treP 5570536..5571978 (-) 1443 WP_024077260.1 PTS system trehalose-specific EIIBC component -
  WLF14_RS25255 (WLF14_25255) treR 5572217..5572921 (+) 705 WP_024077261.1 trehalose operon repressor Regulator
  WLF14_RS25260 (WLF14_25260) - 5573368..5574672 (+) 1305 WP_342308316.1 hypothetical protein -
  WLF14_RS25265 (WLF14_25265) - 5575053..5575685 (-) 633 WP_024077263.1 NAD(P)H-dependent oxidoreductase -
  WLF14_RS25270 (WLF14_25270) - 5575767..5576747 (-) 981 WP_024077264.1 sterol desaturase family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26800.15 Da        Isoelectric Point: 6.0897

>NTDB_id=890956 WLF14_RS25255 WP_024077261.1 5572217..5572921(+) (treR) [Pseudomonas fluorescens strain IMGN2]
MSKYNQIYTDLLANITTERLQRGTRLPSETELMDAYQASRGTVRRAIEQLQERGFAQKIHGKGTFVLSPNPIEFQLGGIV
SFHETHADLGDDVRTEVVEFTQFPLEGSLQQHIEAEPGTLITRIKRVRRIGGKRVILDINHFVADLIPGLDRDIAEQSIY
AFIEQTLQLQISYAQRTIEALPRSKDDQAHLDLDGQSHVIVVSNQTFLQDGRQFEYTESRHTLDKFYFSDIARR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=890956 WLF14_RS25255 WP_024077261.1 5572217..5572921(+) (treR) [Pseudomonas fluorescens strain IMGN2]
ATGAGCAAATACAACCAGATCTATACCGATCTGCTTGCCAACATCACCACTGAACGCCTGCAACGTGGCACCCGTCTTCC
CTCCGAAACCGAATTGATGGATGCCTACCAGGCCAGCCGTGGCACCGTGCGTCGGGCCATCGAGCAGTTGCAGGAGCGTG
GGTTCGCGCAAAAAATCCACGGCAAGGGCACTTTCGTGTTGTCGCCCAACCCCATCGAGTTCCAATTGGGTGGCATCGTC
AGCTTCCACGAAACCCACGCCGACCTGGGCGACGACGTACGCACCGAAGTGGTCGAGTTCACCCAGTTCCCACTGGAAGG
CTCATTGCAACAACACATCGAAGCCGAACCCGGCACCCTGATCACGCGGATCAAGCGCGTCCGGCGCATCGGCGGCAAAC
GGGTGATCCTCGACATCAACCACTTTGTCGCCGACCTGATTCCCGGCCTGGACCGCGACATCGCCGAGCAGTCGATCTAC
GCGTTCATCGAGCAGACGCTGCAGCTGCAGATCAGCTATGCGCAACGCACCATCGAAGCCCTGCCCCGCAGCAAAGACGA
CCAGGCGCACCTCGACCTAGACGGTCAGAGCCATGTGATTGTGGTGAGTAACCAGACGTTTTTGCAGGATGGGCGCCAGT
TCGAGTACACCGAATCGCGGCATACGCTGGATAAGTTTTACTTTTCGGATATTGCCCGACGGTAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.607

100

0.376