Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU74_RS18375 Genome accession   NZ_AP024884
Coordinates   477357..478439 (+) Length   360 a.a.
NCBI ID   WP_087480916.1    Uniprot ID   A0A1Y6IT86
Organism   Vibrio mangrovi strain CECT 7927     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 472357..483439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS18345 - 473148..473552 (+) 405 WP_200807726.1 NUDIX hydrolase -
  OCU74_RS18350 - 473643..474116 (-) 474 WP_087480921.1 peroxiredoxin -
  OCU74_RS18355 - 474322..474639 (-) 318 WP_087480920.1 DUF496 family protein -
  OCU74_RS18360 - 475103..475750 (+) 648 WP_087480918.1 YceH family protein -
  OCU74_RS18365 - 475760..476050 (+) 291 WP_087480917.1 GIY-YIG nuclease family protein -
  OCU74_RS18370 traF 476115..477281 (+) 1167 WP_390623666.1 conjugal transfer protein TraF -
  OCU74_RS18375 luxP 477357..478439 (+) 1083 WP_087480916.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCU74_RS18380 luxQ 478463..481051 (+) 2589 WP_087480915.1 LuxQ periplasmic sensor domain-containing protein Regulator
  OCU74_RS18385 - 481097..481621 (-) 525 WP_087480914.1 hypothetical protein -
  OCU74_RS18390 - 481801..483285 (+) 1485 WP_087480913.1 cobyric acid synthase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41316.08 Da        Isoelectric Point: 7.1116

>NTDB_id=89094 OCU74_RS18375 WP_087480916.1 477357..478439(+) (luxP) [Vibrio mangrovi strain CECT 7927]
MMRFSGLILTACFLIYHSTAYALSGYWHYNEFLEEHPNQKLLTQSLANAVRLAPKSLQVSQDHPVKISVIYPGQQVSDYW
RRNIKAFELRLNELGVKYEIHQVFTRPNLDARQQSLSLMEALKSKPDYLIFTLDTTRHRKFIEHVLRGAETKLILQNITT
PVKDWAHRQPWMYIGFDHEIGTGLLADYFKKILKPHSPYSVLYFSQGYVSEARGDTFIQSMDKYQLVSSFYTQANQESAY
KITLENIREHPEIKLLYTCSTDVALGAVKALKELGREDIQINGWGGGSAELDALQKHDLDVTVMRMNDDTGVAMAEAVKW
DLEGKEVPTVYSGDFEVVSSQDNAAKIETLKKRAFRYSDR

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=89094 OCU74_RS18375 WP_087480916.1 477357..478439(+) (luxP) [Vibrio mangrovi strain CECT 7927]
ATGATGAGATTTTCCGGACTTATTCTGACAGCATGCTTTCTGATTTATCACTCGACAGCCTATGCACTGAGTGGTTATTG
GCATTACAACGAATTTCTTGAAGAGCACCCGAATCAGAAATTATTGACTCAATCTCTGGCGAATGCGGTTCGTTTAGCTC
CGAAATCGCTACAGGTTTCGCAGGATCACCCGGTCAAAATATCGGTTATTTATCCGGGACAGCAAGTGTCTGACTACTGG
CGTCGCAATATCAAAGCTTTTGAGCTGCGTTTGAATGAACTTGGGGTTAAATACGAAATTCATCAGGTTTTTACCCGGCC
TAATCTGGATGCCCGTCAACAAAGTTTGTCGTTAATGGAAGCTTTAAAAAGTAAACCTGATTATTTAATTTTTACTCTGG
ATACAACCAGACACAGAAAATTCATTGAACACGTATTAAGAGGTGCGGAGACCAAACTGATTCTGCAGAATATCACGACA
CCAGTGAAAGACTGGGCTCATCGGCAGCCGTGGATGTATATTGGTTTTGATCATGAAATCGGTACTGGTCTGCTGGCTGA
CTATTTTAAGAAAATACTGAAGCCTCATTCTCCCTATTCTGTACTTTATTTTTCTCAGGGTTATGTGAGTGAAGCAAGAG
GAGATACTTTTATTCAGTCGATGGATAAGTATCAGTTGGTATCATCGTTTTATACACAGGCAAATCAGGAAAGTGCTTAT
AAGATCACCCTTGAGAATATCAGAGAACATCCGGAGATTAAGTTGTTATATACCTGCTCGACAGATGTCGCTCTGGGCGC
AGTCAAAGCATTGAAAGAGTTGGGAAGAGAGGATATTCAGATCAATGGCTGGGGTGGTGGTTCTGCTGAGCTGGATGCTT
TGCAGAAACATGATTTGGATGTGACAGTTATGCGAATGAATGATGATACGGGCGTTGCAATGGCTGAAGCGGTTAAGTGG
GATCTTGAAGGCAAAGAAGTACCAACGGTTTATTCCGGGGACTTTGAAGTCGTTTCCAGTCAGGATAATGCGGCTAAAAT
TGAAACGCTGAAAAAGCGTGCATTCCGATACTCTGATCGATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(67-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6IT86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

66.574

99.722

0.664

Multiple sequence alignment