Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCU74_RS17365 Genome accession   NZ_AP024884
Coordinates   249356..250528 (+) Length   390 a.a.
NCBI ID   WP_087481098.1    Uniprot ID   A0A1Y6ITQ5
Organism   Vibrio mangrovi strain CECT 7927     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 244356..255528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS17355 - 244695..245837 (+) 1143 WP_087481100.1 efflux RND transporter periplasmic adaptor subunit -
  OCU74_RS17360 - 245840..248914 (+) 3075 WP_087481099.1 efflux RND transporter permease subunit -
  OCU74_RS17365 cqsA 249356..250528 (+) 1173 WP_087481098.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCU74_RS17370 - 250551..252608 (-) 2058 WP_087481097.1 hybrid sensor histidine kinase/response regulator -
  OCU74_RS17375 - 253260..254072 (+) 813 WP_234993582.1 DUF3289 family protein -
  OCU74_RS17380 nqrM 254316..254519 (-) 204 WP_087481096.1 (Na+)-NQR maturation NqrM -
  OCU74_RS17385 - 254793..255248 (-) 456 WP_087481095.1 heme-degrading domain-containing protein -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 44135.40 Da        Isoelectric Point: 5.6902

>NTDB_id=89093 OCU74_RS17365 WP_087481098.1 249356..250528(+) (cqsA) [Vibrio mangrovi strain CECT 7927]
MINCQKELPEFIKSRMDFLMKDLINTDYGKNLVVGLTPERGDVLIQSNDYLDISEHVEIRGRLIESLQNKKSDMFMSSIF
LHDNNNKYMLENELSKYTNFSNSYISQSGWNANVSLLQAICVPDTNVYIDFFAHMSMWEGARYSCAKIRPFMHNNSNHLR
KLIQRNGPGIIVVDSIYSTIGTIAPLEEIVSIAQEYGCVTVVDESHSLGVYGENGAGMLSSLGLSEKVDFMTASLAKAFA
YRAGLICTNSNFGQCIPYTAFSNIFSSTMMNYEIYGLKATLDVIRSVDDRREALFSLSKRLRLGLREIGLDIRSQSHIIS
LETGDEYNTKLVRDILEEQGIFGSVFCRPATPKNRNIIRFSMNSSLTNEDVDRIISVCKCLLENENVYFK

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=89093 OCU74_RS17365 WP_087481098.1 249356..250528(+) (cqsA) [Vibrio mangrovi strain CECT 7927]
ATGATTAATTGCCAAAAAGAATTGCCTGAATTTATTAAATCAAGAATGGACTTCTTGATGAAAGACCTTATAAATACTGA
TTATGGAAAGAATTTAGTTGTTGGGTTAACTCCTGAAAGAGGAGATGTTCTTATACAAAGTAATGATTACTTAGATATAT
CAGAGCATGTGGAGATTAGAGGTAGATTAATAGAATCATTGCAAAATAAAAAGAGTGATATGTTTATGTCATCAATATTT
CTGCATGACAATAATAATAAATATATGCTAGAAAATGAACTGTCAAAGTATACAAATTTTAGTAACTCTTATATTTCCCA
GTCTGGTTGGAATGCAAATGTTTCTTTATTACAGGCTATTTGTGTACCAGATACTAATGTATATATTGATTTCTTTGCTC
ATATGTCAATGTGGGAAGGTGCTCGATATAGCTGCGCTAAAATTCGTCCATTTATGCACAATAATAGTAACCATCTAAGA
AAACTTATTCAACGTAATGGCCCCGGAATTATTGTGGTTGATTCTATATACAGTACAATAGGAACGATTGCTCCTCTGGA
AGAAATTGTTTCTATTGCACAGGAATACGGATGTGTGACCGTTGTTGATGAGTCTCACTCATTGGGCGTTTATGGAGAAA
ATGGCGCTGGGATGTTAAGTAGCTTAGGCCTGTCCGAAAAAGTTGATTTTATGACTGCCAGCCTGGCTAAAGCATTTGCT
TACCGTGCCGGGCTTATATGTACAAACAGTAACTTTGGTCAATGTATTCCATATACTGCGTTTTCTAATATTTTTAGTTC
AACCATGATGAATTATGAGATTTATGGCTTAAAAGCGACTTTAGATGTCATAAGAAGTGTTGATGATAGAAGAGAAGCAT
TATTTTCCTTATCTAAGCGGCTACGTTTAGGTCTACGTGAAATTGGTCTGGATATAAGAAGTCAATCGCATATTATTTCA
TTAGAGACAGGAGATGAATATAATACGAAATTAGTTAGAGATATTCTTGAGGAGCAGGGTATATTTGGTTCAGTTTTTTG
CCGTCCGGCAACGCCTAAGAATAGAAATATTATTCGATTTTCTATGAACAGTTCTTTAACCAATGAAGATGTTGATCGAA
TAATTTCAGTATGCAAATGTCTACTAGAAAATGAAAATGTATATTTTAAATGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(83-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6ITQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.78

99.231

0.544

Multiple sequence alignment