Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU74_RS14840 Genome accession   NZ_AP024883
Coordinates   3325645..3326652 (-) Length   335 a.a.
NCBI ID   WP_087482862.1    Uniprot ID   A0A1Y6J0V2
Organism   Vibrio mangrovi strain CECT 7927     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3320645..3331652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS14815 rraA 3321184..3321768 (-) 585 WP_087482867.1 ribonuclease E activity regulator RraA -
  OCU74_RS14820 - 3321844..3322761 (-) 918 WP_087482866.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU74_RS14825 hslU 3322933..3324264 (-) 1332 WP_087482865.1 HslU--HslV peptidase ATPase subunit -
  OCU74_RS14830 hslV 3324309..3324848 (-) 540 WP_087482864.1 ATP-dependent protease subunit HslV -
  OCU74_RS14835 ftsN 3324995..3325543 (-) 549 WP_087482863.1 cell division protein FtsN -
  OCU74_RS14840 cytR 3325645..3326652 (-) 1008 WP_087482862.1 DNA-binding transcriptional regulator CytR Regulator
  OCU74_RS14845 priA 3326902..3329106 (-) 2205 WP_087482861.1 primosomal protein N' -
  OCU74_RS14850 rpmE 3329347..3329568 (+) 222 WP_087482860.1 50S ribosomal protein L31 -
  OCU74_RS14855 - 3329858..3331135 (+) 1278 WP_087482859.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36860.40 Da        Isoelectric Point: 6.6046

>NTDB_id=89088 OCU74_RS14840 WP_087482862.1 3325645..3326652(-) (cytR) [Vibrio mangrovi strain CECT 7927]
MATMKDVAQLAGVSTATVSRALMNPEKVSPSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAVEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDASKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEIVNYLTQMGHKRIGEIAGPDSAALCHFRHQGYMQALRRAGITMNPAYYYKGDFSFEAGVKAIRQLLGLSDPPGA
VFCHNDMMAIGAIQEAKRLGVRVPQDLSVVGFDDINFAQYCDPPLTTVSQPRYEIGRQAMLMMLEVLRGHDVRAGSRLLE
TKLVIRDSVAPPRAT

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=89088 OCU74_RS14840 WP_087482862.1 3325645..3326652(-) (cytR) [Vibrio mangrovi strain CECT 7927]
ATGGCGACAATGAAGGATGTTGCTCAATTAGCGGGAGTGTCAACCGCGACCGTATCCAGGGCATTGATGAATCCCGAAAA
AGTGTCGCCATCGACAAGAAAACGGGTTGAAGATGCTGTTCTTGAGGCGGGATATTCTCCGAATTCGCTGGCACGCAATT
TAAGACGTAACGAATCAAAAACGATTGTCGCTATCGTGCCTGATATTTGTGATCCTTATTTTACTGAAATCATTCGGGGA
ATTGAGGACGCAGCGGTAGAGCATGGCTATCTGGTGTTGCTGGGTGATAGCGGTCAGCAGAAGAAGCGGGAAAGCTCCTT
CGTTAATCTGGTATTCACTAAACAGGCTGACGGAATGCTGCTGCTCGGCACTGATTTACCTTTTGATGCCAGTAAATCAG
AACAGAAGAATCTGCCACCAATGGTGATGGCCTGCGAATATGCACCAGAGCTGGAATTGCCGACAGTTCACATTGATAAC
CTGACGTCTGCTTTTGAAATTGTGAATTATCTGACTCAGATGGGACACAAACGGATTGGTGAAATTGCTGGTCCTGACTC
AGCCGCTTTGTGCCATTTCCGCCATCAGGGATACATGCAGGCTTTAAGACGTGCTGGCATTACAATGAACCCTGCCTATT
ACTACAAAGGTGACTTCAGTTTTGAAGCTGGTGTAAAAGCGATCCGGCAATTACTGGGTCTGTCGGATCCTCCGGGGGCT
GTATTCTGCCACAATGACATGATGGCTATCGGTGCAATTCAGGAAGCAAAACGTCTGGGTGTCCGTGTTCCGCAGGATTT
ATCAGTCGTCGGTTTTGATGATATTAATTTTGCTCAGTACTGTGATCCTCCGTTAACCACGGTTTCTCAACCCCGATATG
AGATTGGCCGTCAGGCAATGCTGATGATGCTGGAAGTGCTACGGGGACATGATGTCAGAGCTGGCTCTCGTTTACTGGAG
ACAAAACTTGTGATTCGCGATAGTGTTGCGCCTCCGCGAGCGACGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6J0V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

88.253

99.104

0.875
  cytR Vibrio parahaemolyticus RIMD 2210633

85.586

99.403

0.851

Multiple sequence alignment