Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABK11_RS01945 Genome accession   NZ_AP027685
Coordinates   418040..418717 (-) Length   225 a.a.
NCBI ID   WP_072778692.1    Uniprot ID   -
Organism   Escherichia coli strain PSS-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413040..423717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK11_RS01930 (VEE24_03740) chiA 414407..417100 (+) 2694 WP_104774102.1 bifunctional chitinase/lysozyme -
  AABK11_RS01935 (VEE24_03750) bfd 417269..417463 (+) 195 WP_097510819.1 bacterioferritin-associated ferredoxin -
  AABK11_RS01940 (VEE24_03760) bfr 417535..418011 (+) 477 WP_000675504.1 bacterioferritin -
  AABK11_RS01945 (VEE24_03770) pilD 418040..418717 (-) 678 WP_072778692.1 prepilin peptidase GspO Machinery gene
  AABK11_RS01950 (VEE24_03780) gspM 418717..419178 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  AABK11_RS01955 (VEE24_03790) gspL 419175..420338 (-) 1164 WP_258784351.1 type II secretion system protein GspL -
  AABK11_RS01960 (VEE24_03800) gspK 420353..421336 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  AABK11_RS01965 (VEE24_03810) gspJ 421329..421917 (-) 589 Protein_389 type II secretion system minor pseudopilin GspJ -
  AABK11_RS01970 (VEE24_03820) gspI 421910..422287 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  AABK11_RS01975 (VEE24_03830) gspH 422284..422793 (-) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  AABK11_RS01980 (VEE24_03840) gspG 422801..423238 (-) 438 WP_104774103.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24928.81 Da        Isoelectric Point: 7.6352

>NTDB_id=89082 AABK11_RS01945 WP_072778692.1 418040..418717(-) (pilD) [Escherichia coli strain PSS-10]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRWTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=89082 AABK11_RS01945 WP_072778692.1 418040..418717(-) (pilD) [Escherichia coli strain PSS-10]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCTGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.558

100

0.373

Multiple sequence alignment