Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RQN46_RS01435 Genome accession   NZ_CP136414
Coordinates   298523..299101 (-) Length   192 a.a.
NCBI ID   WP_353067378.1    Uniprot ID   -
Organism   Arcanobacterium hippocoleae strain StanS     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 275579..302219 298523..299101 within 0


Gene organization within MGE regions


Location: 275579..302219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQN46_RS01310 (RQN46_01325) dnaE 275579..279118 (+) 3540 Protein_246 DNA polymerase III subunit alpha -
  RQN46_RS01315 (RQN46_01330) - 279260..279484 (-) 225 WP_309955253.1 RNA-binding S4 domain-containing protein -
  RQN46_RS01320 (RQN46_01335) - 279580..279993 (-) 414 WP_309955251.1 Fur family transcriptional regulator -
  RQN46_RS01325 (RQN46_01340) - 280098..280969 (-) 872 Protein_249 metal ABC transporter permease -
  RQN46_RS01330 (RQN46_01350) - 281063..281218 (-) 156 WP_353066541.1 hypothetical protein -
  RQN46_RS01335 (RQN46_01355) - 281211..281789 (-) 579 WP_353066543.1 ATP-binding cassette domain-containing protein -
  RQN46_RS01340 (RQN46_01360) - 282035..283179 (-) 1145 Protein_252 metal ABC transporter substrate-binding protein -
  RQN46_RS01345 (RQN46_01370) - 283407..284801 (+) 1395 WP_309955243.1 glycine--tRNA ligase -
  RQN46_RS01350 (RQN46_01375) dusB 284989..286209 (+) 1221 WP_309955241.1 tRNA dihydrouridine synthase DusB -
  RQN46_RS01355 (RQN46_01380) - 286294..287564 (+) 1271 Protein_255 deoxyguanosinetriphosphate triphosphohydrolase -
  RQN46_RS01360 (RQN46_01385) - 287626..287868 (+) 243 Protein_256 CHC2 zinc finger domain-containing protein -
  RQN46_RS01365 (RQN46_01390) - 288057..288664 (+) 608 Protein_257 toprim domain-containing protein -
  RQN46_RS01370 (RQN46_01395) - 288833..289609 (+) 777 WP_353067376.1 hypothetical protein -
  RQN46_RS01380 (RQN46_01405) - 290261..291640 (+) 1380 WP_353066545.1 hypothetical protein -
  RQN46_RS01385 (RQN46_01410) - 291724..292680 (+) 957 WP_353066547.1 LPXTG cell wall anchor domain-containing protein -
  RQN46_RS01390 (RQN46_01415) - 293008..293292 (+) 285 WP_309955233.1 hypothetical protein -
  RQN46_RS01395 (RQN46_01420) - 293396..293995 (+) 600 WP_309955230.1 hypothetical protein -
  RQN46_RS01405 (RQN46_01430) - 294358..294864 (+) 507 WP_353066550.1 phosphoribosyltransferase -
  RQN46_RS01410 (RQN46_01435) def 294948..295439 (+) 492 WP_353066552.1 peptide deformylase -
  RQN46_RS01415 (RQN46_01440) - 295603..296109 (+) 507 WP_309955224.1 DUF3145 domain-containing protein -
  RQN46_RS01420 (RQN46_01445) - 296396..296830 (-) 435 WP_309955222.1 hypothetical protein -
  RQN46_RS01425 (RQN46_01450) - 297043..297664 (+) 622 Protein_267 L-threonylcarbamoyladenylate synthase -
  RQN46_RS01430 (RQN46_01455) - 297757..298440 (+) 684 WP_309955218.1 HAD hydrolase-like protein -
  RQN46_RS01435 (RQN46_01460) rcrQ 298523..299101 (-) 579 WP_353067378.1 ATP-binding cassette domain-containing protein Regulator
  RQN46_RS01440 (RQN46_01465) - 298987..299991 (-) 1005 WP_353066555.1 ABC transporter transmembrane domain-containing protein -
  RQN46_RS01445 (RQN46_01470) - 300021..300395 (-) 375 WP_353066557.1 hypothetical protein -
  RQN46_RS01450 (RQN46_01475) - 300396..302219 (-) 1824 WP_353066559.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20885.60 Da        Isoelectric Point: 4.3170

>NTDB_id=890796 RQN46_RS01435 WP_353067378.1 298523..299101(-) (rcrQ) [Arcanobacterium hippocoleae strain StanS]
MLLDGTNTRTMAKSDLRSHMGIVLQDTWLFEGTIRENLAFGADDPSDEQIFAAAKATGIDRLIRQLPEGYNTVLDADATV
LSAGEKQLLTIARAYISQPEILILDEATSSVDTRTEMLVQNAMNQLRIGRTSFIIAHRLSTIRDADLIIVMVDGDVVEQG
THDSLLAAKGAYAKLYQAQFAGADSVPGTTEE

Nucleotide


Download         Length: 579 bp        

>NTDB_id=890796 RQN46_RS01435 WP_353067378.1 298523..299101(-) (rcrQ) [Arcanobacterium hippocoleae strain StanS]
ATTCTCCTTGATGGTACTAATACTCGCACAATGGCGAAGAGCGATTTGCGCTCTCATATGGGGATCGTCTTACAGGATAC
CTGGCTTTTTGAAGGCACGATTCGCGAGAATTTAGCCTTTGGTGCTGATGATCCCAGCGACGAGCAAATTTTTGCGGCCG
CAAAAGCTACCGGGATTGACCGGTTAATTCGCCAGCTACCAGAGGGTTATAACACGGTTCTCGATGCAGATGCTACCGTT
CTTTCAGCCGGTGAAAAACAGCTGCTGACGATCGCGCGCGCCTATATTTCACAACCCGAAATTCTCATCCTTGACGAAGC
CACATCATCAGTAGATACCCGCACTGAGATGCTCGTCCAAAATGCAATGAATCAGCTGCGTATCGGGCGTACATCATTTA
TCATCGCGCACCGTCTCTCCACGATCCGCGATGCTGATTTGATTATCGTCATGGTTGACGGGGATGTAGTTGAGCAAGGC
ACACACGATTCCTTACTTGCCGCAAAAGGCGCGTATGCAAAACTTTATCAGGCTCAATTTGCGGGTGCGGATAGCGTTCC
TGGCACAACTGAAGAGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(3-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.989

92.708

0.547
  comA/nlmT Streptococcus mutans UA159

39.773

91.667

0.365