Detailed information NTG0089075

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCU74_RS06960
• Genome accession: NZ_AP024883
• Coordinates: 1531286..1532710 (-)
• Length: 474 a.a.
• NCBI ID: WP_087479035.1
• Uniprot ID: -
• Organism: Vibrio mangrovi strain CECT 7927
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1526286..1537710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU74_RS06940	cdd	1526979..1527866 (-)	888	WP_087479031.1	cytidine deaminase	-
OCU74_RS06945	-	1528116..1529930 (-)	1815	WP_087479032.1	DUF6055 domain-containing protein	-
OCU74_RS06950	-	1530134..1530811 (-)	678	WP_087479033.1	LrgB family protein	-
OCU74_RS06955	-	1530824..1531189 (-)	366	WP_087479034.1	CidA/LrgA family protein	-
OCU74_RS06960	sbcB	1531286..1532710 (-)	1425	WP_087479035.1	exodeoxyribonuclease I	Machinery gene
OCU74_RS06965	-	1533248..1533781 (-)	534	WP_087479036.1	copper-binding protein	-
OCU74_RS06970	-	1533824..1536952 (-)	3129	WP_087479037.1	efflux RND transporter permease subunit	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54496.70 Da
• Isoelectric Point: 6.0266

>NTDB_id=89075 OCU74_RS06960 WP_087479035.1 1531286..1532710(-) (sbcB) [Vibrio mangrovi strain CECT 7927]
MKNSEQPTFFFFDYETWGTHPAKDRPCQFAGVRTDSDFNVIGEPLVIFCKLPADYLPAPEAALITGITPQQANTKGLSEP
EFIHRIHQELAKPNTTSLGYNNIRFDDEITRYTCYRNFIDPYAWSWQNGNSRWDLLDVARACHALRPEGVEWPQNEDGTT
SFKLEHLSVANGIEHANAHDAMADVYATIELAKVIRKAQPKLFDYFCSMRHKRKLNDLIDIVSMTPLMHVSGMLGSHCQY
TSWVVPLAWHPQNKNAVIMVDLAKDPQPLFDLDADALRGRLYTKHDDLQEDELPVPVKLVHLNKCPILAPAKTLTAENAS
SIGIDRDKCLHHLALIKQHPEIREKLVQIFSEEKDYTTDSDVDTQLYSGFFNPADKAAMEIIRQTSPDALQDLSISFQDP
RIKPLLFRYRARNYPETLTMPEQKQWQSHCQDYFSQHMDDYILRLENLAHEHEQDAHKMQILKSIYHYVASLTS

Nucleotide

• Length: 1425 bp

>NTDB_id=89075 OCU74_RS06960 WP_087479035.1 1531286..1532710(-) (sbcB) [Vibrio mangrovi strain CECT 7927]
ATGAAAAATAGCGAACAACCGACATTCTTCTTTTTTGATTATGAAACCTGGGGAACGCACCCTGCCAAAGATCGCCCTTG
CCAGTTTGCCGGTGTCCGGACCGATTCGGATTTCAATGTCATCGGAGAACCATTAGTCATCTTTTGCAAGCTTCCGGCAG
ATTACCTTCCGGCACCGGAAGCAGCTCTGATTACCGGCATTACACCACAGCAGGCCAATACCAAAGGTTTATCCGAACCG
GAATTTATCCACCGTATTCATCAGGAACTGGCAAAACCCAATACAACCAGTCTGGGCTATAACAATATTCGCTTTGACGA
TGAGATCACCCGCTATACCTGCTACCGTAATTTTATCGACCCCTATGCATGGAGCTGGCAGAACGGTAACTCCCGCTGGG
ACTTGCTGGATGTAGCCAGAGCCTGTCATGCACTTCGCCCGGAAGGTGTTGAGTGGCCTCAAAATGAGGATGGAACTACC
AGCTTCAAACTGGAACATCTCTCCGTTGCGAATGGTATCGAACATGCCAACGCGCATGATGCGATGGCTGATGTTTACGC
GACCATTGAACTAGCAAAAGTTATCAGAAAGGCACAACCCAAATTATTTGATTACTTTTGCAGTATGCGCCATAAGCGTA
AGCTGAACGACCTGATCGATATTGTCAGCATGACACCATTGATGCACGTGTCCGGTATGTTGGGAAGTCACTGTCAATAC
ACCAGTTGGGTTGTTCCACTCGCATGGCACCCTCAGAATAAAAATGCCGTGATCATGGTTGACCTGGCAAAAGATCCACA
ACCACTTTTTGATCTGGATGCTGATGCGCTTCGGGGACGTCTCTATACCAAACATGATGATTTACAAGAGGATGAACTCC
CTGTCCCGGTTAAACTGGTGCATCTGAATAAATGCCCGATCCTTGCTCCGGCCAAAACGCTGACAGCAGAGAACGCCAGC
TCGATAGGAATCGACAGAGACAAGTGTCTGCATCATTTAGCACTGATCAAACAACACCCGGAAATCAGAGAGAAGCTGGT
ACAGATTTTTAGTGAAGAAAAAGACTATACCACGGATTCCGATGTAGACACGCAGCTGTACAGCGGCTTCTTCAATCCTG
CCGATAAAGCGGCGATGGAAATCATCCGGCAAACATCTCCTGATGCATTGCAGGATTTATCCATTTCTTTTCAGGATCCG
CGTATCAAACCGCTATTGTTCCGTTATCGGGCCAGAAATTATCCGGAGACACTCACAATGCCGGAACAGAAACAGTGGCA
ATCCCACTGTCAGGACTACTTCTCTCAGCACATGGATGATTATATTCTGCGTCTGGAAAATCTTGCTCATGAACATGAGC
AGGATGCGCACAAGATGCAGATACTGAAATCAATCTACCATTACGTTGCCAGCCTGACATCGTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	73.996	99.789	0.738