Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU74_RS03500 Genome accession   NZ_AP024883
Coordinates   783536..784054 (+) Length   172 a.a.
NCBI ID   WP_087480267.1    Uniprot ID   -
Organism   Vibrio mangrovi strain CECT 7927     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 778536..789054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS03490 - 778849..781692 (+) 2844 WP_087480265.1 pitrilysin family protein -
  OCU74_RS03495 gshA 781782..783383 (+) 1602 WP_087480266.1 glutamate--cysteine ligase -
  OCU74_RS03500 luxS 783536..784054 (+) 519 WP_087480267.1 S-ribosylhomocysteine lyase Regulator
  OCU74_RS03505 - 784147..785421 (-) 1275 WP_087480268.1 HlyC/CorC family transporter -
  OCU74_RS03510 - 785504..786298 (-) 795 WP_087480269.1 inner membrane protein YpjD -
  OCU74_RS03515 ffh 786558..787937 (+) 1380 WP_087480270.1 signal recognition particle protein -
  OCU74_RS03520 rpsP 788103..788351 (+) 249 WP_087480271.1 30S ribosomal protein S16 -
  OCU74_RS03525 rimM 788374..788928 (+) 555 WP_087480272.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18798.62 Da        Isoelectric Point: 4.7943

>NTDB_id=89073 OCU74_RS03500 WP_087480267.1 783536..784054(+) (luxS) [Vibrio mangrovi strain CECT 7927]
MPLLDSFTVDHTRMSAPAVRVAKTMNTPKGDTITVFDLRFTVPNKAILSEKGIHTLEHLFAGFMRAHLNGDGVEIIDISP
MGCRTGFYMSLIGVPSEQRVADAWLAAMQDVLKVEDQNKIPELNIYQCGTAAMHSLAEAKEIAQSVIGSGITVNQNDDLA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89073 OCU74_RS03500 WP_087480267.1 783536..784054(+) (luxS) [Vibrio mangrovi strain CECT 7927]
ATGCCACTATTAGATAGTTTTACGGTCGATCATACACGTATGAGTGCTCCGGCCGTTCGTGTTGCAAAGACTATGAATAC
ACCGAAAGGTGATACGATTACGGTGTTCGATCTACGTTTCACCGTTCCCAACAAAGCTATCCTTTCTGAGAAAGGGATTC
ACACCTTAGAACACCTGTTTGCTGGCTTTATGAGAGCGCATTTAAACGGTGATGGTGTTGAAATTATTGATATTTCCCCA
ATGGGATGTCGTACAGGTTTTTATATGAGCCTGATTGGTGTTCCTTCTGAGCAGCGGGTCGCTGATGCCTGGCTGGCAGC
GATGCAAGATGTGTTAAAAGTCGAAGACCAGAATAAAATACCGGAACTGAATATTTATCAGTGCGGCACGGCAGCGATGC
ATTCTCTGGCCGAAGCGAAAGAGATTGCCCAGTCGGTCATTGGTAGTGGTATTACCGTGAATCAGAATGATGATCTGGCA
TTACCTGAATCTATGCTTCAGGAGTTGAAGGTTGACTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.211

99.419

0.837

Multiple sequence alignment